Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq47256 118 2e-21 >seq47256 Length=30279 Score = 118 bits (130), Expect = 2e-21 Identities = 334/503 (66%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGA 193693 |||| |||| || || ||||| |||| ||||||| || |||||||| || || || Sbjct 24987 AGTTCAACCCAAAGAAATTTATAACCTTGCTGCTCAATCACACGTTAAAGTGTCATTCGA 24928 Query 193694 GATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGT 193753 | | || |||||| | | |||| || | ||||| ||| | | | || || | Sbjct 24927 ACTTGCTGAATATACTGCAGAGGTTGTGGCCGTTGGAACGCTTCGTCTTTTAGATGCTAT 24868 Query 193754 TCGTATGTTGGGAATGGAGAAAGATGTTCGCATCT-ATCAGGCATCTACCAGCGAACTGT 193812 | | | || |||| |||| || || | |||| || || ||| || || | Sbjct 24867 TAAAACCTGTGGCTTGGA-AAAGTCAGTCAAATTTTATCAAGCCTCCACCTCGGAGCTTT 24809 Query 193813 ATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTT 193872 ||||| || | || ||| | | ||||| || |||||| |||| | ||||| Sbjct 24808 ATGGTAAAGTGCAAGAAGTTCCGCAAAAGGAAACTACCCCATTTTATCCTAGAAGTCCTT 24749 Query 193873 ATGGTGTAGCAAAGTTGTATGGTTATTGGATCA-TCAAGAATTATCGTGAGTCATATGGA 193931 ||||||||||||| | |||| |||||| ||| | | |||| || ||| | ||||| Sbjct 24748 ATGGTGTAGCAAAACTCTATGCATATTGG-TCAGTTATTAATTTCCGGGAGGCCTATGGT 24690 Query 193932 TTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTT 193991 | ||| || ||||||| | |||||||| ||| ||| ||||||||||| | ||| Sbjct 24689 ATGTTTGCTTGTAATGGTATTTTATTCAATCATGAAAGTCCGAGAAGAGGTGAAAACTTT 24630 Query 193992 GTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTT-GGATTACAGAAGATTC- 194049 ||||| | || | || | | |||| || || ||| || | | ||||| Sbjct 24629 GTAACAAGGAAAGTCACTCGCTCAGTCGCTAAAAT-TCAGTTAGGGATCTTG--GATTCA 24573 Query 194050 -TTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAA 194108 || | ||||||||| | || || |||| ||||||||||| || || || || || ||| Sbjct 24572 TTTGAACTTGGTAATTTAGATTCTCAGAGAGATTGGGGACATGCCAAAGACTACGTGGAA 24513 Query 194109 GCGATGTGGTTAATGTTGCAACA 194131 | ||||||| | ||| | ||||| Sbjct 24512 GGGATGTGGCTCATGGTTCAACA 24490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806715695897400