Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq27661 197 1e-45 >seq27661 Length=34041 Score = 197 bits (218), Expect = 1e-45 Identities = 330/475 (69%), Gaps = 14/475 (3%) Strand=Plus/Minus Query 21167 TTTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTT 21226 || ||||||| ||| |||||||| || | ||| ||||||| |||||||| || || Sbjct 22449 TTGGACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTA 22390 Query 21227 CCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTA 21286 || || | ||| ||| ||||||||||||||| ||||| |||| | | ||||| | Sbjct 22389 CCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAAATTTTCGGA 22330 Query 21287 CAACCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345 ||| || ||| | || || ||||||||| ||||||| |||||||| ||| | || Sbjct 22329 CAATTAAGCTCT-ACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATC 22271 Query 21346 ACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405 ||| ||||| || | || | || || || || | || | ||| |||| || | Sbjct 22270 ACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGC 22211 Query 21406 GACGGCTTCAACAATTATATTTATTATCCTAG------ATGTACTAGGGGGATACAATAA 21459 || || ||| ||| || | | || | || ||| || | | | | Sbjct 22210 AACAGCCTCACGAATAATTTCGACAATACGAGCCACGGATGGCTTATGAGCA------AG 22157 Query 21460 TTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTC 21519 ||| ||||||| | ||| |||||||| |||||| || || || ||| ||| | ||| Sbjct 22156 GTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTC 22097 Query 21520 ATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA 21579 || ||||| || | ||||||||| | ||| | || |||||||| ||||| || ||||| Sbjct 22096 GTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAA 22037 Query 21580 TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634 || ||||||||||| |||||||| ||||||||||| |||| | ||| || ||| Sbjct 22036 TGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCG 21982 Score = 93.3 bits (102), Expect = 4e-14 Identities = 201/300 (67%), Gaps = 3/300 (1%) Strand=Plus/Minus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 |||||||| || || || || || || || || ||||| ||||| |||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | || || || ||||| | | | ||| || || || ||||| || Sbjct 21715 GTAACCTGTACTTCCTGTGTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGAC 21656 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || || ||||||||||| | | |||||| || ||||| | ||| | ||||| | | Sbjct 21655 GCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTCC 21596 Query 21950 ---CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 || || | || || || | || ||||| || ||||||||||| || | Sbjct 21595 TCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTACG 21536 Query 22007 GCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTA 22066 ||||| |||||||| |||| |||||| |||| || |||| ||||| || || ||| Sbjct 21535 GCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATTA 21476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531347855874600