Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq58440 203 4e-47 seq27661 199 5e-46 seq4608 87.8 2e-12 >seq58440 Length=15377 Score = 203 bits (224), Expect = 4e-47 Identities = 455/687 (66%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| | ||||| |||| ||||| |||||||| || ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 62226 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280 || |||| |||| |||| || | ||||||| ||| || ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 ||||||| || || || || | | | ||||||||| || || | || | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 |||| || || | ||||| || || || || || ||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 62461 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62520 | | | |||| | | ||||| | |||| | ||||| ||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 62521 G---TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577 | ||| | |||||| | || | ||| | |||||| || Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 |||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTA 62664 |||| ||||| || || | || |||| Sbjct 5710 AAATAGTTTCAAATATTTGTTTGTTTA 5684 Score = 188 bits (208), Expect = 9e-43 Identities = 576/881 (65%), Gaps = 7/881 (1%) Strand=Plus/Minus Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||||| || ||| || || || | |||| || || |||||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 | || || || | ||||| || | ||| | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63115 ||| || || || | ||| || |||| || || || | |||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 63116 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 63175 || ||| ||| | | || || || || |||||||||| || || || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 63176 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63235 ||||| |||||||| | ||| || || || | |||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 63236 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 ||||||||||||||| ||| |||| ||| || | || || || || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 | || || || || | | || ||| | |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 | ||||||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 63415 ACATTGGAATAATACCGTTTGA-TATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 ||| || | ||| || || || ||| |||||||| || | ||||| || | || Sbjct 4801 GCATGGGTACAATCCCATTAGAGTAT-CCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 |||||| | ||| | ||| || || || || ||| || || | ||| | || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCT 63592 || | || ||||| || || || ||| ||| | ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCT 4624 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | ||| | || | ||||| || | || ||||| || || || || | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || ||| || || ||||| |||| || | || ||||| | ||||| || Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACC 4504 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 ||| | ||| | ||| | ||| || || || |||||||| | || ||| ||||| | Sbjct 4503 TACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAG 4444 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 63812 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4443 TAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 >seq27661 Length=34041 Score = 199 bits (220), Expect = 5e-46 Identities = 335/478 (70%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTA--TAAAtttt 33110 | || || | ||| ||||||||||| |||||||| ||||| | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 33111 tttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 | | | || || | |||||| || || |||| |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 33171 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 33227 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 33228 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGG---ATGCA 33283 ||| | || || || ||||| || | | | ||| ||| ||| Sbjct 22216 AATCGCAACAGCCTCACGAATAATTTCGACAA----TACGAGCCACGGATGGCTTATGAG 22161 Query 33284 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 33343 | ||| ||||||| | ||| || ||||| |||| |||||||||||| || | Sbjct 22160 CAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAA 22101 Query 33344 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 ||||||| ||||| ||||| |||||||| || ||||| || || | ||| |||||||||| Sbjct 22100 GTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAG 22041 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33461 | ||||| || ||||||||||| || || || |||||||||||||||| || ||||| Sbjct 22040 CAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 150 bits (166), Expect = 2e-31 Identities = 219/306 (72%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || |||||||| || || || || ||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 33655 GTAATCTGTACTT-CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 |||| |||||||| |||| ||||| ||| | | || || ||||| |||||||| Sbjct 21715 GTAACCTGTACTTCCTGT-GTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGA 21657 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT--- 33770 || || ||||| ||||| || || |||||| || ||| || | | ||| Sbjct 21656 CGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTC 21597 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| || | | || || | || ||||| ||||| |||||||| ||| | Sbjct 21596 CTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTAC 21537 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 ||||| |||||||||||||| || ||| |||||| ||| || | || || |||||||| Sbjct 21536 GGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATT 21477 Query 33891 TGGATT 33896 ||||| Sbjct 21476 AGGATT 21471 >seq4608 Length=17199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 157086 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 157145 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 157146 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 157205 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 157206 CTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATG-GCAGTCTTTCTAATGGG 157264 | |||| | | ||||| |||| ||||||||| ||| || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 157265 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTTACCAAGTGTTCA 157313 ||| ||||| | || ||||||| ||| || || ||| ||||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAACAAAG-GTTCA 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622299607451400