Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq20317 105 6e-18 seq66674 96.9 3e-15 seq9530 86.0 6e-12 >seq20317 Length=5186 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| | ||||||||| | ||||| | ||| | ||| | Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | ||||| || || || || ||||| || ||||| ||||| Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || ||| | |||| | || |||||| | ||||||| | | | | | | ||||||| Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTA-CTTTATCAGACTATA 266 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||| || || || | ||| ||||||| ||| | |||||||||| Sbjct 265 ACATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGAA 215 >seq66674 Length=28361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| | ||| | Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || ||| || ||| ||||| ||||| || || || ||||| Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 27757 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACG---TCAGCGACTA 26944 |||| | | || | | || |||||| | ||||||| |||| || |||| | || Sbjct 27756 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAA-CGCTTTCAG--ATTA 27700 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| ||||||||| | ||| | || | ||| | ||||| |||| Sbjct 27699 TAACATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGAA 27647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || |||||| | ||||| ||| | ||||| | ||| | || | Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || ||| || ||| ||||| || || || ||||| ||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAG 27300 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||| | ||||||| | | | ||| |||||| Sbjct 27299 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAAC 27240 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||||||||||||||||| | || |||| || | ||| | || ||||| Sbjct 27239 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGCCTTCGTGGTGGAAA 27190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || |||||| | ||||| ||| | ||||| | ||| | ||| | Sbjct 27648 AATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTC 27589 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || || || ||| ||||||||||| || ||||| ||||| Sbjct 27588 TGATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 27529 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| | | || | | || |||||| | || |||| | | | | | | ||||||| Sbjct 27528 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTA-CTTTATCAGACTATA 27470 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||| || || | ||| | || | ||||||||||| || Sbjct 27469 ACATTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGAGGTGG 27421 >seq9530 Length=29750 Score = 86.0 bits (94), Expect = 6e-12 Identities = 200/299 (67%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| ||||| || ||||||||||| || ||| || || || ||| || || | | Sbjct 22208 AAACACATGACGACCTATGGAATGCAGCACAGAACCAACTTGTCACTGAAGGAAAGTTAC 22267 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | || ||| | | ||||| ||||| |||||||| | |||||||| ||| |||||| Sbjct 22268 ATGGGTACATGAGAATGTATTGGGCTAAAAAGATATTAGAGTGGACGGAAAGTCCCGATG 22327 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 ||||| | | || | ||||| || ||| || | || || ||| ||| Sbjct 22328 TAGCGCTGGCTGACGCTCTATATCTTAATGATCACTATGCATTGGATGGAAATGATGCTA 22387 Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAAC 71909 | || | ||| || ||||||||| || || || | || ||| | | | ||| Sbjct 22388 ATGGATTTGTAGGGTGCATGTGGTCGATATGTGGAATCCATGATCAAGGATGGCGTGAAA 22447 Query 71910 G-TCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAA 71967 | || | | |||||||||||||| |||||||| | |||| ||| |||| || || || Sbjct 22448 GATCCA-TATTTGGTAAAATTCGATATATGAACTATGATGGATGCAAACGTAAATTTAA 22505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478164800518800