Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq46208 183 8e-41 seq58440 158 3e-33 seq27661 134 4e-26 >seq46208 Length=8390 Score = 183 bits (202), Expect = 8e-41 Identities = 381/558 (68%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||||| | |||||| | | ||||||||||| ||| |||||||||||||| ||| Sbjct 6074 GGAATCGCAGAAGAATTATTTTGGTTTATTCGAGGATCAACAAATGCAAATGAGCTTAAG 6015 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT 111470 | |||||| || | || ||||||||||| ||| | || ||| ||||||| | || Sbjct 6014 GAAAAAAAGGTGAGGATATGGGATGGAAACTCCTCAAGGGAATTTTTAGATTCTATGGGA 5955 Query 111471 CTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTT 111530 || | ||| ||||| || |||||||| ||||| || ||||| |||||||| || | | Sbjct 5954 TTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATATGGATTCCAATGGCGTCATTAT 5895 Query 111531 GGTGCAGACTACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTACA 111589 || || || ||||| | |||||| ||| | || | | ||| ||| || | Sbjct 5894 GGAGCGGAATACAATAATATGCAC-ACTGACTACCAAGGGAAAGGAGTTGACCAGCTTTC 5836 Query 111590 GAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATG 111649 |||| || | || || | ||||||| |||||| || | ||| | || || Sbjct 5835 TCATGTTATCAAGACTATAAAAGATAACCCAAACGATCGTCGTATATTAATGTGCGCCTG 5776 Query 111650 GAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTA 111709 ||| || || | | ||||| ||||| || ||||| | || || ||||| Sbjct 5775 GAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTCACTGTTTGGCTCAATTTTA 5716 Query 111710 TGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 ||| | | || || || || ||| | ||||| |||||||| ||||| || | || Sbjct 5715 TGTTGCCAATGGTGAACTATCTTGTCAATTATATCAACGATCTGCAGATATGGGATTAGG 5656 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTA--ATCGCTCATTTTACA 111827 || || ||||| || |||||||| | || |||| | ||| | || ||| | || Sbjct 5655 AGTACCTTTTAACATAGCAAGTTATTCTCT-CTTA-ACGATTATGTTGGCCCATGTGACC 5598 Query 111828 AATCTCAAACCGGGTGAATTCATTC--ACGTTATCGGAGATGCGCATGTTTACACAAACC 111885 ||||||||||| ||||||||||||| || ||| || ||||| || || |||| || | Sbjct 5597 AATCTCAAACCTGGTGAATTCATTCATACCTTA--GGTGATGCACACGTATACAACAATC 5540 Query 111886 ACATTGATGCACTTAAAA 111903 |||||||||| |||| || Sbjct 5539 ACATTGATGC-CTTAGAA 5523 >seq58440 Length=15377 Score = 158 bits (174), Expect = 3e-33 Identities = 356/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 |||||||| |||||| | || ||||||||||| || ||| | ||||| |||| || || Sbjct 4774 GGATACTCTAATGGGATTGTACCCATGCTTCGAGTTTTTAATAATACGGCGAAATATGTT 4833 Query 363814 GACCAGGGTGG-AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 ||||| ||||| | ||| || || || ||||| || ||| | || ||| ||||| Sbjct 4834 GACCAAGGTGGTAACAAAAGGC-CTGGCGCATTTGCAATTTATTTAGAACCTTGGCATGC 4892 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG---AAAAGAGGAATTGCGTGC 363929 ||| ||||||| ||||| || || || ||||| ||||| ||||| || | || Sbjct 4893 GGATGTTTTTGATTTTCTAGAACTACGTAAAAATACGGGGGCTGAAGAGCAA---AGGGC 4949 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGG 363989 | | ||| | |||||||| |||||| || |||| || ||||| || ||||| | | Sbjct 4950 AAGGGATTTATTCTATGCTCTTTGGATTCCTGATTTATTCATGAAACGAGTGGAAGAGGA 5009 Query 363990 TAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 | | |||| || | || || || ||||||||||| | ||||| |||||||| Sbjct 5010 TGGTATTTGGAGCCTTATGTGTCCTCATGAATGTCCAGGGTTAGATGATGTTTGGGGTGA 5069 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA--AGGCTCGTAAGACA-AT 364106 || | || ||||| || ||||| ||| | || | || | || | Sbjct 5070 AGATTTTGAGAAACTATATCTTAAATATGA---GGATGAAAACAAATTCAGGCGGCAGGT 5126 Query 364107 TCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTA 364166 || || || || | ||| |||||||| || ||||| ||||| || || || ||||| Sbjct 5127 ACCTGCTCATAAAGTGTGGGAGGCCATCATTGAATCGCAAATTGAAACTGGGACTCCCTA 5186 Query 364167 TATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCA 364226 ||||| ||||| || || ||||| || || || || || || || | || || || | Sbjct 5187 CATGTTATACAAGGACTCTTGCAATCGGAAATCTAATCAAAAGAACTTGGGAACTATAAA 5246 Query 364227 GCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 || |||||||||| || | ||||| | | |||| ||||| Sbjct 5247 ATGCTCTAATTTATGTACCGAAATAGTAGAATATAGCTCTCCTGACGA 5294 Score = 125 bits (138), Expect = 2e-23 Identities = 285/426 (67%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 || || ||||| || || |||||||| || || || || || || || || || ||| Sbjct 5887 CGGAATTCCCTTCTTCTTGCTCCCATGCCAACCGCCTCCACGGCCCAAATACTAGGTAAC 5946 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 || || | | || | | ||| ||| |||| || | || || | ||||| ||| Sbjct 5947 AATGAAGGAATTGAGGCATACACATCAAATATTTACTCCAGACGCGTCTTATCCGGTGAA 6006 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 |||| | || ||| | | || | | || | | || | || |||| |||| Sbjct 6007 TTTCAAATTGTGAATCAACATTTATTGAGAGACTTGACTGATATGGATCTTTGGGATGAC 6066 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||||| | |||| || || | |||||| || || || || ||||| | |||| Sbjct 6067 GAAATGAAACAAAATATTATTGCGGATAATGGATCCGTACAAAATATTCCTCAAATTCCT 6126 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGA 365030 || ||| | ||| |||| ||||| || ||||||||||| || || | || || | Sbjct 6127 GACGATATTAAGAAGCTTTATAAAACAGTCTGGGAAATTTCTCAAAAGA-CGGTCCTTCA 6185 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| || |||||||| |||||||| ||| || || || || ||| || || | Sbjct 6186 AATGGCTGCTGATCGCGGGGCTTTTATTGATCAAAGTCAATCCTTGAACATACATATCGC 6245 Query 365091 TCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAA 365150 ||||| | || || || ||||||||||||||||||||||| |||||| ||| | || Sbjct 6246 ACAGCCTAACTACGGAAAACTTACATCCATGCATTTCTACGGTTGGAAACTCGGATTGAA 6305 Query 365151 GACAGG 365156 ||||| Sbjct 6306 AACAGG 6311 >seq27661 Length=34041 Score = 134 bits (148), Expect = 4e-26 Identities = 321/477 (67%), Gaps = 15/477 (3%) Strand=Plus/Plus Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || |||| || || ||||||| ||||||| || || ||||| |||||||| || || Sbjct 21977 TCCTTCGGAGATCGAATTATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGGTCA 22036 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 ||| | | || || ||| |||| ||||||| | | ||||| ||||| || |||||||| Sbjct 22037 TTTGCTTCCATATTCTGGTTAAAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCAAAC 22096 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 || | || |||| ||||| | ||||| |||||||| ||| | | | | | | Sbjct 22097 GAACTTATATCTAGAGACGAGGGATTGCATACAGATTTTGCCTGTCTTATGTTTAGACAC 22156 Query 22660 CATATCATTCATAAACTTCCATATGAAACT-GTACTT--GATATTATTACAAATGCAGTT 22716 | | |||||| | ||| | || ||| | || |||||| | || ||| Sbjct 22157 CTTGC---TCATAAGC---CATCCGTGGCTCGTATTGTCGAAATTATTCGTGAGGCTGTT 22210 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 | ||||| || |||| | ||||| | || || | | | || || || Sbjct 22211 GCGATTGAAAGTGAATTTCTAACTGAGGCACTCCCCGTTCGAATGTTGGGAATGAACTGT 22270 Query 22777 GAATCAATGAGTACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTA 22835 || || ||| || || ||||||||||||||||||||| | || | | || || Sbjct 22271 GATTCCATG-GTGCAATATATTAAATTTGTTGCAGATAGACTTCTTGTAGAGCTTAATTG 22329 Query 22836 TGCAAAGCATTA--TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAA 22893 | | || ||| |||| | ||||| ||||| | |||||| |||||||||||| Sbjct 22330 TCCGAAAATTTACCTAACTGAG--AATCCCTTTGATTTTATGGAAAATATTTCACTTGAT 22387 Query 22894 GGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || |||||||| || ||||||| ||||| ||||| ||||| || ||||||||| Sbjct 22388 GGTAAAACCAATTTTTTTGAAAAAAAGGTTGGGGAATATCAAAAGGCGGGTGTTATG 22444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301964809535030