Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq58440 197 2e-45 seq27661 190 3e-43 seq4608 91.5 2e-13 >seq58440 Length=15377 Score = 197 bits (218), Expect = 2e-45 Identities = 454/687 (66%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| | ||||| |||| ||||| |||||||| || ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 |||| | | ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 62081 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135 || |||| |||| |||| || | ||||||| ||| || ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 ||||||| || || || || | | | ||||||||| || || | || | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 |||| || || | ||||| || || || || || ||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 62316 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62375 | | | |||| | | ||||| | |||| | ||||| ||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 62376 G---TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432 | ||| | |||||| | || | ||| | |||||| || Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 |||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTA 62519 |||| ||||| || || | || |||| Sbjct 5710 AAATAGTTTCAAATATTTGTTTGTTTA 5684 Score = 194 bits (214), Expect = 2e-44 Identities = 577/881 (65%), Gaps = 7/881 (1%) Strand=Plus/Minus Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||||| || ||| || || || | |||| || || || ||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 | || || || | ||||| || | ||| | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 62970 ||| || || || | ||| || |||| || || || | ||||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 62971 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030 || ||| ||| | | || || || || |||||||||| || | || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63090 ||||| |||||||| | ||| || || || | |||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 63091 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 ||||||||||||||| ||| |||| ||| || | || || || || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | || || || || | | || ||| | |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 | ||||||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 63270 ACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 ||| || | ||| ||||| || ||| ||||||||||| | ||||| || | || Sbjct 4801 GCATGGGTACAATCCCATTAGA-GTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 |||||| | ||| | ||| || || || || ||| || || | ||| | || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCT 63447 || | |||||||| ||||| || || ||| ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCT 4624 Query 63448 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | ||| | || | ||||| || | || ||||| || || || || | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 63508 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 || ||| || || ||||| |||| || | || ||||| | ||||| || Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACC 4504 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 ||| | ||| | ||| | ||| || || || |||||||| | || ||| ||||| | Sbjct 4503 TACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAG 4444 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 63667 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4443 TAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 63803 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862 ||||||||| || | |||||||| |||||||| ||||| ||||| || || | ||| Sbjct 4194 ATCACTTCAGAGAAAACCTTTTTTGTCTCTTTGTGAAGATTGGATACAGCAATCCGAGCA 4135 Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 63922 || || ||||| || || ||||| | || || || || || ||||| || || | | Sbjct 4134 GCAAGGATGGCGTAGTCTGGATGCTTCGTTGTCATCGTTGCCGCAATTTCCGCAGCTAAA 4075 Query 63923 GTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATT 63982 ||||||| || | || | |||||| ||| | ||| || ||||| | || || Sbjct 4074 TTGTCCAACTCAATAGTGGATACACCCGGATAGAGTCCCGAAATTACCTTAAGAGTAATG 4015 Query 63983 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 64042 | |||| | |||||| ||| | |||||||| | ||| | |||||||||| Sbjct 4014 GCCGTGGGATTCACATGATCCATGTCCAGCCCATAACAAAGCTTTTGTACACGAGATGTG 3955 Query 64043 ATTTTATCAAA 64053 || ||||| || Sbjct 3954 ATCTTATCGAA 3944 >seq27661 Length=34041 Score = 190 bits (210), Expect = 3e-43 Identities = 336/478 (70%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 32350 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 32409 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 32410 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTA--TAAAtttt 32467 |||| || | ||| ||||||||||| ||||| || ||||| | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 32468 tttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 | | | || || | ||||||||| ||||||| |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 32528 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 32584 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 32585 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG-TGGAT-ACAAT 32642 ||| | || || || ||||| || || | | | ||| ||| | | | Sbjct 22216 AATCGCAACAGCCTCACGAATAATT--TCG-ACAATACGAGC-CACGGATGGCTTATGAG 22161 Query 32643 AAA--TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 32700 || ||| ||||||| | ||| || ||||| || | |||||||||||| || | Sbjct 22160 CAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAA 22101 Query 32701 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 32760 |||||| ||||| ||||| |||||||| || ||||| || || | ||| |||||||| | Sbjct 22100 GTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAG 22041 Query 32761 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 ||||||| || |||||||| || || || || || ||||||||||||| || ||||| Sbjct 22040 CAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 >seq4608 Length=17199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 155714 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 155773 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 155774 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 155833 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 155834 CTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATG-GCAGTCTTTCTAATGGG 155892 | |||| | | ||||| |||| ||||||||| || || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 155893 TTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 155941 ||| |||||| | || ||||||| ||| ||||| ||| ||||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTCA 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632973299934000