Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq42503 129 5e-25 seq66674 123 2e-23 seq20317 123 2e-23 >seq42503 Length=950 Score = 129 bits (142), Expect = 5e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || ||||||||| | ||||| | ||||| || | || Sbjct 867 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 808 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | || || || ||||| ||||| || || Sbjct 807 AGACACAATTGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGA 751 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| || |||||||| ||||||| | || | ||||| Sbjct 750 TCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTA 691 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||| |||||||| || |||||||| | || | |||||||||| Sbjct 690 TAATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGGAA 638 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || |||||| | ||||| | ||||| || | || Sbjct 411 AATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTC 352 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| | ||| | |||| ||| || || ||||| ||||| || |||| Sbjct 351 TGATACTATTGAGAATGTTAAGGCTAAAATTCAA-GATAAGGAAGGTATTCCCCCAGACC 293 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || ||||||||||| |||| | || | ||||| | Sbjct 292 AACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATA 233 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| || ||||| || || ||||| || || | |||||||| | Sbjct 232 ACATCCAAAAGGAGTCCACCCTTCACTTAGTCCTCAGATTGAGAGGAGGRA 182 Score = 105 bits (116), Expect = 6e-18 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || || ||| |||||||| | ||||| || | || Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| | || |||| ||| || || ||||| ||||| || | Sbjct 579 AGACACCATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAGGAAGGAATTCCTCCAG 524 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || | | || ||||| ||||| ||||||||||||| | ||| | ||||| Sbjct 523 ATCAGCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATT 464 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| || || || || || || || || || || || | |||||||||| Sbjct 463 ACAATATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGGAA 410 Score = 102 bits (112), Expect = 7e-17 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| | ||||| | ||||| || | ||| Sbjct 182 ATGCARATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 123 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| ||| | ||| |||||| || || ||||| ||||| || || || Sbjct 122 GATACTATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 63 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||| | | |||||||| || |||||||||||||||| || ||| Sbjct 62 CAGAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGACGTACT 18 >seq66674 Length=28361 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || ||||||||| | ||||| | ||||| || | || Sbjct 28104 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 28045 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | || || || ||||| ||||| || || Sbjct 28044 AGACACAATTGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGA 27988 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| || |||||||| ||||||| | || | ||||| Sbjct 27987 TCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTA 27928 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||| |||||||| || |||||||| | || | ||||| |||| Sbjct 27927 TAATATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGGAA 27875 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| |||| || ||| |||||||| | |||||||| | || Sbjct 28332 AATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTC 28273 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| | || |||| ||| || || ||||| ||||| || | Sbjct 28272 AGACACAATTGAAAATGTCA---AGGCTAAAATTCAA-GATAAGGAAGGTATTCCCCCAG 28217 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || ||||| || ||||||||||| |||| | || | |||| Sbjct 28216 ACCAACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATT 28157 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| || ||||| || || | || || || |||||||||||| Sbjct 28156 ATAACATCCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGATTAAGAGGAGGAA 28103 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || |||||| | ||||| | ||||| || | || Sbjct 27648 AATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTC 27589 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | ||| | |||| ||| ||||||||||| ||||| || || | Sbjct 27588 TGATACTATAGAAAATGTTAAGGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCAGATC 27530 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||| || ||||||||||| |||| || ||| | || || | Sbjct 27529 AGCAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATA 27470 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||||||||| |||||| | |||||||| |||| || ||||| || Sbjct 27469 ACATTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGAGGTGG 27421 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || |||||| | ||||| | ||||| ||| | ||| Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| ||||| || || ||||| || || Sbjct 27359 GATACCATTGAG--AATGTTAAAGCCAAAATTCAA-GACAAGGAGGGCATTCCTCCAGAT 27303 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || |||||||| ||||||| |||||| | |||||| Sbjct 27302 CAGCAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTAT 27243 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || |||||||||||||| || || || || || | | || | || |||||||| Sbjct 27242 AACATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGCCTTCGTGGTGGAAATTA 27187 >seq20317 Length=5186 Score = 123 bits (136), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || ||||||||| | ||||| | ||||| || | || Sbjct 216 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 157 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | || || || ||||| ||||| || || Sbjct 156 AGACACAATTGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGA 100 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| || |||||||| ||||||| | ||| | ||||| Sbjct 99 TCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTA 40 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||| |||||||| || |||||||| Sbjct 39 TAATATTCAAAAGGAATCCACTCTTCATTTAGT 7 Score = 123 bits (136), Expect = 2e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || ||| | ||||| | |||||||| | || Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||||| || || ||||| ||||| || || || Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| || |||||||||||||||| || ||| | || || || Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAA 265 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || || || ||||| || || || | |||||||||| Sbjct 264 CATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGAA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432888790249475