Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq27661 147 2e-30 seq35509 134 2e-26 seq22490 134 2e-26 seq30974 127 2e-24 seq64580 89.7 6e-13 seq25157 82.4 8e-11 >seq27661 Length=34041 Score = 147 bits (162), Expect = 2e-30 Identities = 244/350 (70%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 |||||| || || || | | || |||||||| || || | ||||| ||||||||||| Sbjct 21800 TATGTAAGTGTCTATAAGTAATGAGTACATTTCGGAGTGAATGTTCTCGATTGCAATTTG 21741 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 || |||||||||||||| || ||||| | ||| ||||| || | ||||||||| || | Sbjct 21740 AAACCCGTAGAAACATCTCGCCTCCGTAACCTGTACTTCCTGTGTAAATCTCTCCACAAT 21681 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT- 93539 || || || || || || || || || || ||||| ||||| | | |||||| | Sbjct 21680 GTTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTA 21621 Query 93540 --GTTTCTCATCATCTTTAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACT 93595 ||| ||||||| || || || ||||| ||| | || || || || ||| Sbjct 21620 CCGTTCCTCATCA--TTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACT 21563 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATAT 93655 || || ||||||||||| |||| | || || || ||||| | ||| || || |||| Sbjct 21562 TCCTCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATCAAAATAT 21503 Query 93656 TGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || |||| || || || | |||||| || ||| ||| | ||||| Sbjct 21502 TCGATAGGAAGGATTACGAATCTATTAGGATTCTCTCGTAGAAGAGGCTC 21453 >seq35509 Length=7928 Score = 134 bits (148), Expect = 2e-26 Identities = 94/105 (90%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||| | || |||| Sbjct 4690 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGTACGTGAGC 4749 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTTT 126366 |||||||||||||||||||||||||||| | || || ||||||| Sbjct 4750 GTGGGTTCGAACCCCACACCTGACAAATATGTTTTTTTAATTTTT 4794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/73 (88%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 126277 CGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC--CCTCGGGAGCGTGGGTTCGAAC 126334 ||||||||||||||||||||||||||| |||||||| || ||||||| |||||||| Sbjct 3161 CGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCAAGTCCGTGAGCGTGCGTTCGAAC 3102 Query 126335 CCCACACCTGACA 126347 |||||||||||| Sbjct 3101 TCCACACCTGACA 3089 >seq22490 Length=23944 Score = 134 bits (148), Expect = 2e-26 Identities = 85/91 (93%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||| | || |||| Sbjct 12259 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGTACGTGAGC 12318 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||||||||||||||||||||||||||| Sbjct 12319 GTGGGTTCGAACCCCACACCTGACAAATTAT 12349 Score = 132 bits (146), Expect = 5e-26 Identities = 98/111 (88%), Gaps = 5/111 (5%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||||||||||||||||||||||||||||||||||| |||||||| | || || Sbjct 10139 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGTACGTGA 10198 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA-ATTA--TTATTGGAATTTTTGT 126368 |||||||||||||||||||||||||||| |||| || || ||||| ||| Sbjct 10199 GCGTGGGTTCGAACCCCACACCTGACAATATTAATTTTTTTAAATTTATGT 10249 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||| Sbjct 8401 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACAATCGTGAGC 8460 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 8461 GTGGGTTCGAACCCCACACCTGACA 8485 >seq30974 Length=27239 Score = 127 bits (140), Expect = 2e-24 Identities = 84/94 (89%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||| | || ||||| Sbjct 21811 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACRAACGTGAGCG 21752 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||| ||||| Sbjct 21751 TGGGTTCGAACCCCACACCTGACAARAYRTTATT 21718 >seq64580 Length=18381 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 126282 GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCGTGGGTTCGAACCCCAC 126339 |||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| Sbjct 18381 GGTCTAAGGCGCCAGATTTAAGCTCTGGTTCACGTATGTGAGCGTGGGTTCGAACCCCAC 18322 Query 126340 ACCTGACAAAT 126350 ||||| ||||| Sbjct 18321 ACCTGGCAAAT 18311 >seq25157 Length=28193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC 126312 ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 53 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556281908394600