Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq42503 111 1e-19 seq20317 105 5e-18 seq66674 102 6e-17 >seq42503 Length=950 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || ||||||| | || || |||||||| || | ||| |||||| | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| |||||| ||||| || || | ||| | | || Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || ||| | || ||||||||||| ||| |||||||| || |||| | |||||||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| |||||||| || || ||||| |||| | | || |||||||| Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGGA 411 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || | ||| ||||| | Sbjct 867 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 808 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| || || ||||| || ||| | || | | || Sbjct 807 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 748 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| | |||||| || ||| | | ||||| || Sbjct 747 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATAA 688 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| |||||||| ||||||||| | ||||| | || |||||||| Sbjct 687 TATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGGA 639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || ||||| || ||||| || || | ||| ||||| | Sbjct 411 AATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTC 352 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||| || ||| | || | |||| Sbjct 351 TGATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 292 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| |||| ||| || ||| | | ||||| || Sbjct 291 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAA 232 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 || || ||||| || || ||||| Sbjct 231 CATCCAAAAGGAGTCCACCCTTCA 208 >seq20317 Length=5186 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || | ||| ||||| | Sbjct 216 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 157 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| || || ||||| || ||| | || | | || Sbjct 156 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 97 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| | |||||| || |||| | | ||||| || Sbjct 96 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAA 37 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||| |||||||| ||||||||| | ||||| Sbjct 36 TATTCAAAAGGAATCCACTCTTCATTTAGTATT 4 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| || || || || |||||||| | || ||| || | Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | ||||| || ||| ||||| || || | || | | || Sbjct 612 AGATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 553 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| ||||||||||| || || | |||||| | ||| || | || ||||| Sbjct 552 GCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAA 493 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || |||||| | |||||| | || |||||||| Sbjct 492 CATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGGA 444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| ||||||| | || || ||||| || || | ||| |||||| | Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| ||||| || || | ||| | | || Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | || |||||||| |||||| |||||||| | ||| | | || || || Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAA 265 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| ||||| || || |||||| |||| | | || |||||||| Sbjct 264 CATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGA 216 >seq66674 Length=28361 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || ||||| || ||||| || || | ||| ||||| | Sbjct 28104 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 28045 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| || || ||||| || ||| | || | | || Sbjct 28044 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 27985 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| | |||||| || ||| | | ||||| || Sbjct 27984 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATAA 27925 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| |||||||| ||||||||| | ||||| | || |||| ||| Sbjct 27924 TATTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGGA 27876 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| ||||||| | || || |||||||| || | ||| |||||| | Sbjct 28332 AATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTC 28273 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| |||||| ||||| || ||| | || | |||| Sbjct 28272 AGACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 28213 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| |||| ||| || ||| | | ||||| || Sbjct 28212 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAA 28153 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| || || ||||| |||| | | ||| |||||||| Sbjct 28152 CATCCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGATTAAGAGGAGGA 28104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || ||||| || || | ||| ||||| | Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| |||||| || || || ||| | || | | || Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 27757 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| |||||| | |||||| || ||| | | ||||| || Sbjct 27756 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAA 27697 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||||||||||||| | || ||| | || |||| ||| Sbjct 27696 CATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGA 27648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357761814215410