Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq66674 134 1e-26 seq20317 104 2e-17 seq42503 102 7e-17 >seq66674 Length=28361 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | |||||| || || | |||||||||||||||||||| |||||| Sbjct 27193 CCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 27252 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || |||||| | |||||||||||| |||| | ||| || || || |||||| Sbjct 27253 AAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27312 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||| ||| | |||| | | |||| ||| || | || || || Sbjct 27313 ATGCCCTCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAAC 27371 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || ||||| || ||||||||||| Sbjct 27372 TTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| ||||||||||| | ||| || |||||||||||||| || || Sbjct 27418 ATACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCT 27477 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || | |||||||||||| |||| | ||| || || || ||| Sbjct 27478 GATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 27537 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| ||| ||| | ||| | | ||| | || || | | ||| Sbjct 27538 GGAATACCTTCTTTGTCTTGAAT-TTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTC 27596 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| || ||||||||||| Sbjct 27597 AACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||| ||||||||||| | |||||||| ||||||||||| ||||| | || | Sbjct 27660 TCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCC 27719 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | |||||||||||| |||| | ||| ||||| || || ||||| ||||| || Sbjct 27720 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 27779 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 ||| ||| ||| | |||| | | ||||| || || | | |||||| || | || | Sbjct 27780 GTCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGA 27838 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||| ||||| || ||||| Sbjct 27839 TTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| |||||||| | || ||||| |||||||| || ||||| | || | Sbjct 27888 TCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCC 27947 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | |||||||||||| |||| | ||| ||||| || || ||||| ||||| || Sbjct 27948 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 28007 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || ||||| ||| | | ||||| ||||| | | |||||| || | || | Sbjct 28008 ATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGAT 28067 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| | || || ||||| || ||||| Sbjct 28068 TGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||| ||||| | || | ||| || | |||||||||| Sbjct 28135 GTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCA 28194 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||| |||||||| || ||||| ||||| || || ||| || || Sbjct 28195 GCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTG 28254 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | | ||| || || | || | ||||| || ||||||||| Sbjct 28255 ACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTT 28314 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 28315 TTAACAAAAATCTGCAT 28331 >seq20317 Length=5186 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 ||||| |||||||| | || ||||| |||||||| || ||||| | ||| | | Sbjct 1 CTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCA 60 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| | |||||||||||| |||| | ||| ||||| || || ||||| ||||| || Sbjct 61 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 120 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| ||| | | ||||| ||||| | | |||||| || | || | Sbjct 121 TCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATT 180 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| | || || ||||| || ||||| Sbjct 181 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || ||||||||||| || || | |||||| |||||| Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||| ||||| | || | | ||| || || |||||||| ||||| || || Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || || | | ||||| ||||| | | ||| || || | || | ||||| Sbjct 355 ATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGATTGTTTTT 414 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||| |||||||||||||| Sbjct 415 CCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 |||| ||||| || | || ||||| |||||||||||||| ||| || ||||| | Sbjct 685 CTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCA 744 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || | ||| || ||||| |||| | ||| || || || || || || ||||| || Sbjct 745 TCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTA 804 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | ||||| ||||| | | ||| || || | || | Sbjct 805 TCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATG 864 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||| ||||| || ||||| Sbjct 865 GTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq42503 Length=950 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| |||||||| | || ||||| |||||||| || ||||| | || | Sbjct 651 TCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGNGTTCTTCC 710 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | |||||||||||| |||| | ||| ||||| || || ||||| ||||| || Sbjct 711 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 770 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || ||||| ||| | | ||||| ||||| | | |||||| || | || | Sbjct 771 ATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGAT 830 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| | || || ||||| || ||||| Sbjct 831 TGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419708562931980