Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq46208 145 7e-30 >seq46208 Length=8390 Score = 145 bits (160), Expect = 7e-30 Identities = 274/403 (68%), Gaps = 0/403 (0%) Strand=Plus/Plus Query 20189 TTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACA 20248 ||||| | ||| ||||| || || || ||||| || || || ||| | ||| || ||| Sbjct 5545 TTGTATACGTGTGCATCACCTAAGGTATGAATGAATTCACCAGGTTTGAGATTGGTCACA 5604 Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | |||| |||||||| ||||| || || ||||||||||| ||||| || ||| Sbjct 5605 TGGGCCAACATAATCGTTAAGAGAGAATAACTTGCTATGTTAAAAGGTACTCCTAATCCC 5664 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||| | || | ||||| | ||||| || || ||||| | || |||||||||||| Sbjct 5665 ATATCTGCAGATCGTTGATATAATTGACAAGATAGTTCACCATTGGCAACATAAAATTGA 5724 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 || ||||||| || ||||| ||||||| | | || || ||||| || ||| Sbjct 5725 GCCAAACAGTGACAAGGGGGAAGAGCCATCAGGGGAATATCTTTAGGATTCCAGGCGCAC 5784 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || | || | | ||||| || |||| |||||| | | || | || | ||| Sbjct 5785 ATTAATATACGACGATCGTTTGGGTTATCTTTTATAGTCTTGATAACATGAGAAAGCTGG 5844 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTC 20548 |||| || | ||| ||||||| | | | ||| |||| ||| | || | | Sbjct 5845 TCAACTCCTTTCCCTTGGTAGTCAGTGTGCATATTATTGTATTCCGCTCCATAATGACGC 5904 Query 20549 CACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 || ||||| || || || || || | ||| ||||| ||||| Sbjct 5905 CATTGGAATCCATATACTGGACCGAGATCTCCCTCTTCTCTGT 5947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440913965388600