Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq47256 138 3e-27 seq66674 134 3e-26 seq20317 123 6e-23 seq42503 114 3e-20 seq17180 111 4e-19 seq12343 98.7 2e-15 seq62093 96.9 8e-15 >seq47256 Length=30279 Score = 138 bits (152), Expect = 3e-27 Identities = 243/347 (70%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | || ||| | ||||| |||||||||||| |||| || | ||||| ||| Sbjct 24830 CAAGCCTCCACCTCGGAGCTTTATGGTAAAGTGCAAGAAGTTCCGCAAAAGGAAACTACC 24771 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTG-TAA 72535 || ||||||||| |||| ||||| ||||| ||||| | || || |||||| || | || Sbjct 24770 CCATTTTATCCTAGAAGTCCTTATGGTGTAGCAAAACTCTATGCATATTGG-TCAGTTAT 24712 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 |||| ||| ||| | ||| |||| || || || |||| |||||||| || || Sbjct 24711 TAATTTCCGGGAGGCCTATGGTATGTTTGCTTGTAATGGTATTTTATTCAATCATGAAAG 24652 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | ||||| | | || || || | ||| |||| ||||| || | || Sbjct 24651 TCCGAGAAGAGGTGAAAACTTTGTAACAAGGAAAGTCACTCGCTCAGTCGCTAAAA--TT 24594 Query 72656 CAAT--GGTGTCGAAAAATGCATGT-ATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 72712 || | || || || ||| | | || |||||| ||||| | | ||||||||||| Sbjct 24593 CAGTTAGGGATC-TTGGATTCATTTGAACTTGGTAATTTAGATTCTCAGAGAGATTGGGG 24535 Query 72713 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAG 72759 | |||| || || ||||| |||| |||||| | ||| | ||||||| Sbjct 24534 ACATGCCAAAGACTACGTGGAAGGGATGTGGCTCATGGTTCAACAAG 24488 >seq66674 Length=28361 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || | ||| | |||| |||||||| || |||||||| | Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGAT 27480 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || ||||| || ||||||||||| || || ||||||| ||| || || |||| Sbjct 27481 AAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTG---ATCTGGA 27537 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || || ||||| || || || |||||||||| ||| | ||| Sbjct 27538 GGAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCA 27597 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| || || || || || || || ||||| ||||||||| Sbjct 27598 ACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 123 bits (136), Expect = 6e-23 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || || |||| ||| || |||||||| ||||| || | || || | ||| Sbjct 28116 TCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 28175 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTC 288374 || ||||||||||| || || ||||||| ||| ||||| |||||| || ||||| Sbjct 28176 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTG---GTCTGGGGGAATACCTTC 28232 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||| || ||||| || || || ||||| || | || | ||| ||||| || || Sbjct 28233 CTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGT 28292 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || |||||||| || || || ||||||||| Sbjct 28293 GATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 >seq20317 Length=5186 Score = 123 bits (136), Expect = 6e-23 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 |||||| || | ||||| || || ||||| || |||||||| | | || ||||| Sbjct 228 TCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCC 287 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTC 288374 |||||||||||||| || || || |||| | ||| || |||| || |||||||| Sbjct 288 ATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTG---ATCTGGAGGAATTCCTTC 344 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||| |||||||| || || || ||||| |||| || | ||| ||||| || || Sbjct 345 CTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGT 404 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || || ||||| || || || ||||||||| Sbjct 405 GATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||||| | || ||||| || || ||||| ||||| || || Sbjct 708 TTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAA 767 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || ||| |||||| |||||||| ||||||||||| || | || || Sbjct 768 GATCAAACGTTGCTGA---TCTGGGGGGATTCCTTCCTTATCCTGGATCTTGGTCTTGAC 824 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | ||| ||||| || ||||| || || || || ||||| || Sbjct 825 ATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTT 884 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 885 CACAAAGATTTGCAT 899 >seq42503 Length=950 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| ||||| || | || || | ||| || ||||||||||| || || ||| Sbjct 220 TCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAG 279 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| ||||| |||||| || ||||| ||||| || ||||| || || || Sbjct 280 ATCAAACGTTGTTG---GTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTAACA 336 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| | ||| ||||| || ||||| || || || || | |||||| Sbjct 337 TTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTG 396 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 397 ACAAAAATTTGCATT 411 Score = 107 bits (118), Expect = 5e-18 Identities = 135/185 (73%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || |||||||| | | || ||||| |||||||||||||| || || || |||| | | Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 288352 TGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || |||| || |||||||| ||||| |||||||| || || || || || ||| Sbjct 61 TGCTG---ATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATA 117 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| | ||| ||||| || ||||| || || || || | |||||||| || || Sbjct 118 GTATCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATY 177 Query 288469 TGCAT 288473 ||||| Sbjct 178 TGCAT 182 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||| || || | ||| ||||||||||| || || || || Sbjct 448 TCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAAT 507 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || || |||| || |||||||| ||||| || ||||| || || || Sbjct 508 ATCAATCTTTGCTG---ATCTGGAGGAATTCCTTCCTTATCTTGAATTTTAGCCTTGACA 564 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | ||| ||||| || ||||| || || || || || || || Sbjct 565 TTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTA 624 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 625 ACGAAAATCTGCATT 639 >seq17180 Length=12851 Score = 111 bits (122), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| || || ||||| | || || || || || |||||||| ||||| || |||| Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||| ||| || ||| ||||| ||||| || |||||||||||||| | || || | Sbjct 4061 TCAAACGTTGCTGA---TCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACAT 4005 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| |||| ||| | || || || || || || || || || || || ||||| | Sbjct 4004 TTTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCA 3945 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 3944 CGAAAATCTGCAT 3932 >seq12343 Length=6788 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 17/233 (7%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||||| ||| |||||||| || || ||||| Sbjct 2156 CCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAA 2215 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || || |||||||||||||| | ||||||| ||| || || |||| Sbjct 2216 AGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTG---ATCTAGA 2272 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||||| || ||||||| |||||| | ||| || ||||| |||| | Sbjct 2273 GGAGGTATTCCCTCCTTATCCTTGATTTTTGTTTTAACATTTTCGATAG--------GCC 2324 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || | || ||||| ||||| |||||||| Sbjct 2325 TCAACCTCAAGGGTAATAGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 >seq62093 Length=56387 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || ||||| || | | || | ||| ||||| | || || || || |||| Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | ||||| || ||| ||||| |||||||| ||||||||||| || | ||||| | Sbjct 3588 TGAGACGTTGCTGA---TCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACAT 3644 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| || | ||| | ||| || || || || || ||||| || |||| ||| |||| Sbjct 3645 TTTCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGA 3704 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 3705 CGAAGATTTGCAT 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178397417410870