Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq47256 138 2e-27 seq1218 86.0 1e-11 >seq47256 Length=30279 Score = 138 bits (152), Expect = 2e-27 Identities = 243/347 (70%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| || | || ||| | ||||| |||||||||||| |||| || | ||||| ||| Sbjct 24830 CAAGCCTCCACCTCGGAGCTTTATGGTAAAGTGCAAGAAGTTCCGCAAAAGGAAACTACC 24771 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTG-TAA 68524 || ||||||||| |||| ||||| ||||| ||||| | || || |||||| || | || Sbjct 24770 CCATTTTATCCTAGAAGTCCTTATGGTGTAGCAAAACTCTATGCATATTGG-TCAGTTAT 24712 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 |||| ||| ||| | ||| |||| || || || |||| |||||||| || || Sbjct 24711 TAATTTCCGGGAGGCCTATGGTATGTTTGCTTGTAATGGTATTTTATTCAATCATGAAAG 24652 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 ||| | ||||| | | || || || | ||| |||| ||||| || | || Sbjct 24651 TCCGAGAAGAGGTGAAAACTTTGTAACAAGGAAAGTCACTCGCTCAGTCGCTAAAA--TT 24594 Query 68645 CAAT--GGTGTCGAAAAATGCATGT-ATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 || | || || || ||| | | || |||||| ||||| | | ||||||||||| Sbjct 24593 CAGTTAGGGATC-TTGGATTCATTTGAACTTGGTAATTTAGATTCTCAGAGAGATTGGGG 24535 Query 68702 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAG 68748 | |||| || || ||||| |||| |||||| | ||| | ||||||| Sbjct 24534 ACATGCCAAAGACTACGTGGAAGGGATGTGGCTCATGGTTCAACAAG 24488 >seq1218 Length=13050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 237/356 (67%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 297245 ATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA 297304 ||||||||||||||||| |||| | || ||| ||| || || || || ||| | | Sbjct 3642 ATGTCTTTTGGATTGTAGTTAGGAACCTTTGTCATCCATCCAGTCCCAATACCATCGGCA 3583 Query 297305 CCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGA-TCTTGTCACC 297363 ||||| | |||| | || | || ||| || ||||| || ||||| | ||| | Sbjct 3582 CCATTAATAAGAACCATTGGTAAAATAGGAACGTAATATTCGGGTTCCACTCT----AAG 3527 Query 297364 GTCATCATACAG---ATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACCTGTCGAG 297419 | ||||| | | |||||| |||| || || || || | |||| | | || | Sbjct 3526 ATTATCATCCCGTAAATATTTAAGAACATAGTCATC-GTGAATATGAAACAGGTAGCGTG 3468 Query 297420 TCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCA 297479 || ||| || | || || |||||||| |||||| || ||||||||||||||| ||| Sbjct 3467 TCATAGGATTTAATTGAGTAAAAATATAACGTGCAGATGCATGATCCTTACCACCC-GCA 3409 Query 297480 A-TCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAA 297538 | | | ||| || || || || || ||| ||||| ||||||| || ||| | Sbjct 3408 AGACGAGTACCAAATTGACCAATTGGTAATAACAGGTTGACGTTATTGGACCCTACAAAG 3349 Query 297539 TCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC 297594 | ||||| | || | || || || || || ||||| ||||| ||||| || Sbjct 3348 TTTTGTGCCAAATTTATAATCGTACCCATCAATGAGGCTTCTCCATGATGATATGC 3293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101704824492750