Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq17694 89.7 6e-13 seq20317 86.0 7e-12 seq8061 86.0 7e-12 >seq17694 Length=1740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 1138 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1079 Query 57067 TACTACCGAGGATTGAATATATAA 57090 ||||| |||||||| ||| |||| Sbjct 1078 TACTATCGAGGATT-TATAAATAA 1056 >seq20317 Length=5186 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | || || || || | ||| ||||||||||| ||||| || | | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || | ||||| ||||| || || | || ||||| || | || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| ||| ||| || |||| | | | |||||| | |||||| Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| ||||| || || || |||||||||||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq8061 Length=1481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| || |||||||||||||||||| |||||||||||| Sbjct 1302 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGRTACTCACCACTA 1243 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 1242 TACTATCGAGGATT 1229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542648096343600