Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq20317 120 3e-22 seq62093 114 1e-20 seq66674 104 2e-17 seq42503 96.9 3e-15 >seq20317 Length=5186 Score = 120 bits (132), Expect = 3e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||||||| || | ||||| ||||| || ||||||||||| || |||| Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGAT 276 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| | || || || ||| |||| | | |||||| || |||||| Sbjct 277 AAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 336 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| ||| ||| || | || || || |||||| Sbjct 337 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACT 396 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | || || || || | |||||| || ||||| |||||| Sbjct 397 TCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | |||| ||||| || ||||| ||||| |||||||| |||| Sbjct 445 CCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAC 504 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| | |||||| || ||| | || || | |||||| || || ||| Sbjct 505 AAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGA 564 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| || || ||| || || | ||||| || || || Sbjct 565 ATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACC 624 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| || ||||||||||| || || || |||||| Sbjct 625 TCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 >seq62093 Length=56387 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||| ||||| | | || | | ||||| ||||||||||| ||| | | Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| || ||||| || |||||||||||||| || || || || || ||| ||| | Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| | || || || | || | ||||||||| ||||||||||| |||| Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 64434 AAATTTGCATTTT 64446 | |||||||| || Sbjct 3708 AGATTTGCATCTT 3720 >seq66674 Length=28361 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||| ||||| | | ||||| | ||||| | || Sbjct 27217 TGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCTTCCAATTGT 27276 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || ||||| || |||||||| || || || ||||| | |||| Sbjct 27277 TTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCTTG-AATTTT 27335 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| ||| | |||||| || || ||||| | ||| | || || || || Sbjct 27336 GGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTTTACCAGT 27395 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| |||||||| ||||| Sbjct 27396 GAGTGTTTTAACGAAAATCTGCAT 27419 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | ||| || |||||||||||||| || |||| | || || | || || Sbjct 27439 ACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCCTCT 27498 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || ||||| || |||||||| |||||||| ||||| Sbjct 27499 AATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGA 27558 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | |||||| || || ||||| | ||| | || || Sbjct 27559 ATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGTTTTA 27618 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | ||||| |||||||| |||||| Sbjct 27619 CCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | |||| ||||| || ||||| ||||||||||| ||||||| Sbjct 27649 CCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAA 27708 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| | || || || ||| | || | || || || || || ||| Sbjct 27709 AGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27768 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| | |||| ||||| ||| || | |||||| || || || Sbjct 27769 ATACCTTCCTTGTCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGAC 27827 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | || || || || | ||||| || || ||||||||| Sbjct 27828 TTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 >seq42503 Length=950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || |||| |||| || || || ||||| ||||| ||||||| Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || | || || || ||| | || | || || ||||| || ||| Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||| ||| ||| | |||||| || || ||| Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | || || || || || || || || |||||||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || || | |||| || || || || || || |||||||| | Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| | |||||||| ||| | || | | ||||| || |||||| Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| ||| ||| || | || || ||| || ||| Sbjct 532 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACT 591 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | ||||| |||||||| |||||| Sbjct 592 TCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 64262 ATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGC 64321 ||||| || |||| | || || | ||||| | || || || ||| |||| | | | Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 64322 TGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTA 64381 ||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | ||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 64382 TCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 ||| || || ||||| | ||| | || || || || || || || || ||||| ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 64442 AT 64443 || Sbjct 181 AT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499125388002600