Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq66674 116 4e-21 seq20317 98.7 1e-15 >seq66674 Length=28361 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 ||||||||||| | | ||||| ||||||||||| ||||| | |||||| ||| Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCC 27495 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||||||||| | | |||| | ||| || || || ||||| |||||||||||||| Sbjct 27496 TCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTC- 27554 Query 138523 GTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| |||| | |||| | ||| | || || | | || || || | || | || Sbjct 27555 TTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGT 27614 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || ||||| || ||||||||||| Sbjct 27615 TTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| || || | | | || || ||||||||||| || ||| | ||| || Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||| | | |||| | ||| || || || ||||| || || || ||| Sbjct 27265 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTG 27324 Query 138520 TCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | || | ||| || | | ||| || || | || | Sbjct 27325 TC-TTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGAT 27383 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||| || ||||| || ||||||||||| Sbjct 27384 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||||||||||| | | || |||||||||||||| || || Sbjct 27649 CCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAA 27708 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || | ||||||||| | | |||||| ||| ||||| || || || Sbjct 27709 AGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27768 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | ||||| | ||| | || || | | || || Sbjct 27769 ATACCTTCCTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGAC 27827 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| || ||||| ||||| || ||||| Sbjct 27828 TTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||| || || | || | ||||| | ||||||||| | | Sbjct 28138 GACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCA 28197 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| |||||||| || || |||||||| || || ||| |||| | || | Sbjct 28198 AAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCT-TGAATTTTAGCCTTGAC 28256 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||||| || | || | ||||| |||||||||||||| Sbjct 28257 ATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTT 28316 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 28317 AACAAAAATCTGCAT 28331 >seq20317 Length=5186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || |||||||| | | | || |||||||| ||||||||||| | Sbjct 445 CCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAC 504 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | || || || | | |||| || | ||| || || || || Sbjct 505 AAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGA 564 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | |||| | ||| | ||| || | | || || Sbjct 565 ATTCCTTCCTTATC-TTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAAC 623 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | || || ||||||| |||||| ||||| |||||||| Sbjct 624 CTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || ||||| | | | ||||||||||||||||| ||||| Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGAT 276 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | |||||| || | | | || | | ||| || || ||||| Sbjct 277 AAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 336 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| || | | ||| | ||||| | | ||||| Sbjct 337 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACT 396 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| |||||||| |||||||||||||| Sbjct 397 TCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || ||||| || | | || ||||||||||||||||||||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| | ||| || || | | |||| | ||| || || || || || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | ||| | ||||| | | ||||| Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || |||||||| ||||| || ||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495746504218800