Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq66674 167 2e-36 seq42503 134 1e-26 seq20317 122 6e-23 seq12343 96.9 2e-15 seq62093 84.2 2e-11 >seq66674 Length=28361 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct 27649 CCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAA 27708 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| ||||| | || ||||| ||||| || ||| Sbjct 27709 AGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27768 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||| ||| |||| |||||||| | ||| || Sbjct 27769 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACT 27828 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || |||||||| || || ||||| ||||| |||||||| Sbjct 27829 TCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | |||||||| || || ||||| ||||| ||||| Sbjct 28105 CCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 28164 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || ||||||||||| ||||| | |||||||| |||||||| ||| Sbjct 28165 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 28224 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| || ||| |||| || || || | ||| || Sbjct 28225 ATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACT 28284 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || ||||||||||| |||||||| ||||| Sbjct 28285 TCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||||||||||||||| | || || |||||||| ||||| || || || Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTC--TG 27478 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | || ||||||||||| ||||| | |||||||| || || || | Sbjct 27479 ATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 27538 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| |||||| || ||| ||||||||||||| | ||| | Sbjct 27539 GAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAA 27598 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || |||||||| || || ||||| || ||||| ||||| Sbjct 27599 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || ||||||||||| || || || ||||| || || ||||| Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| ||||| | || ||||| ||||| || ||| Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| ||| ||| |||| || || || | ||| || Sbjct 27997 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 28056 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || |||||||| || | || || ||||| |||||||| Sbjct 28057 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| || ||||||||||| |||||||| ||||| |||||| | | | | | ||| Sbjct 27208 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCT 27267 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| ||||| | |||||||| || || || ||||| || |||||||| Sbjct 27268 TCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCT 27327 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| ||| ||| | || || ||||| || || || | || || ||| Sbjct 27328 TGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTT 27387 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || ||||| |||||| Sbjct 27388 TTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 >seq42503 Length=950 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || ||||||||||| ||||| | |||||||| |||||||| ||| Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| || ||| | || |||||||| | ||| || Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || |||||||| || | || || |||||||||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 410 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | ||| || |||||||| || || || || || ||||||||| Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| |||||||| ||||||| | || || || ||| Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| || ||| |||| || || || ||| || Sbjct 532 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACT 591 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || ||||| || ||||| ||||| Sbjct 592 TCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Score = 118 bits (130), Expect = 8e-22 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| || ||||||||||| || || || ||||| || || ||||| Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| ||||| | || ||||| ||||| || ||| Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| ||| ||| |||| || || || | ||| || Sbjct 760 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 819 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || |||||||| || | || || ||||| |||||||| Sbjct 820 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 |||||||||||||| ||||| | ||||| | ||| || || |||||||||||||| Sbjct 28 TCTTCTAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTA 87 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||| || ||| | || |||||||| | ||| || || | || || Sbjct 88 TCTTGGATTTTAGCCTTGACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATA 147 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || | || || |||||||| ||||| Sbjct 148 GTTTTACCAGTTAAGGTCTTGACAAAAATYTGCAT 182 >seq20317 Length=5186 Score = 122 bits (134), Expect = 6e-23 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | || ||||||||||| || || ||||| ||||| || || || Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTC--TG 274 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | |||||||||||||| ||||| | ||||| | ||| || || | Sbjct 275 ATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAG 334 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || ||||| || ||| |||| ||||| || | ||| | Sbjct 335 GAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCA 394 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| || || |||||||| |||||||| ||||| Sbjct 395 CTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||| |||||||||||||| || || ||||| |||||||| || || Sbjct 445 CCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTC--TG 502 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| || || || ||||| | |||| | ||| || || | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || ||| ||| || || |||| || ||||| ||| | Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||||| || || |||| |||||| ||||| || ||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | ||||| || || || || || ||||| |||||||| ||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG--G 730 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | || || ||||| || ||||| | |||||||| || || || | Sbjct 731 ACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || || ||| | || ||| |||| || || || | ||| | Sbjct 791 GGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||||||||| || |||||||| ||||| |||||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || ||||||||||| || || || ||||| || || ||||| ||| |||| | Sbjct 1 CTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCA 60 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||| ||||| | || ||||| ||||| || ||||| |||||||| Sbjct 61 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 120 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| ||| ||| |||| || || || | ||| || || | || || Sbjct 121 TCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATT 180 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || | || || ||||| |||||||| Sbjct 181 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 >seq12343 Length=6788 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/240 (69%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | ||| |||||||| || || ||||||| |||||||| || Sbjct 2156 CCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAA 2215 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || ||||||||||| ||| | | |||||||| || || || ||| Sbjct 2216 AGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGA 2275 Query 15070 ---ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| ||||| || ||||| |||| ||| |||| |||| || || Sbjct 2276 GGTATTCCCTCCTTATCCTTGATTTTTGTTTTAACATTTTCGATAG----GC----CTCA 2327 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || || | |||||| |||||||| | || || ||||| ||||| |||||| ||| ||| Sbjct 2328 ACCTCAAGGGTAATAGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCATACCTGAGATA 2387 >seq62093 Length=56387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || ||||| ||||| | | | || | ||||| | || |||||||| | | Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | ||| || || || |||||||||||||| || || || | || ||| ||| Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || ||||| | ||| || || | ||||||||| || || |||| |||||| || | Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 15167 AAATTTGCATATTTGA 15182 | |||||||| || || Sbjct 3708 AGATTTGCATCTTGGA 3723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357029756962025