Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq66674 122 8e-23 seq20317 111 1e-19 seq17180 91.5 1e-13 seq42503 89.7 5e-13 >seq66674 Length=28361 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| ||||| || | ||||| ||||||||||| || |||||| Sbjct 27192 TCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGA 27251 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | ||||| ||||| ||||||| || |||||||| ||||| Sbjct 27252 TAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 27311 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||| | ||| ||| || || | | || | ||| || | ||| | Sbjct 27312 AATGCCCTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAA 27370 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || || ||||| || ||||||||||| Sbjct 27371 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || || ||||| | ||| |||||||||||||| || || || | || || ||| Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCC 27495 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 |||| ||||| ||||| ||||||| || |||||||| ||||| || || || ||||| Sbjct 27496 TCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCT 27555 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 ||||| ||| | | ||| | || || | | || ||||| | || | ||| Sbjct 27556 TGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGTT 27615 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| || ||||||||||| Sbjct 27616 TTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || | ||||| | |||| || | || ||||| ||||| || || ||||| Sbjct 28104 TCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGA 28163 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| |||| ||||| ||||| ||||||| || || || || || || Sbjct 28164 AAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 28223 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||||| ||||| | ||| | ||||| | | || || Sbjct 28224 AATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCAC 28283 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || ||||||||||| |||||||||||||| Sbjct 28284 TTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 >seq20317 Length=5186 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| |||||||| || || || | || || ||| ||| Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| ||||| | ||||||| ||||||||| ||||| || || ||||| || | Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | ||| | ||||| | | || ||||| | || | ||||| Sbjct 355 ATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGATTGTTTTT 414 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| |||||||||||||| Sbjct 415 CCAGTGAGAGTTTTAACAAAAATCTGCAT 443 >seq17180 Length=12851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||| ||||| || | || || ||| |||| || ||||| || ||| Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| || |||||||| ||||| || |||||||| ||| |||||| ||| | | || Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACATTTT 4002 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| || || | ||| || || | ||| | ||||| || || || || || || | Sbjct 4001 CGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACGA 3942 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 3941 AAATCTGCAT 3932 >seq42503 Length=950 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || |||||||||||| | || | ||| ||| Sbjct 430 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCT 489 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || || ||||| | ||||||| |||||||| ||||| || || ||||| || Sbjct 490 AATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 549 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | ||| | |||||| | || ||||| | || | ||||| Sbjct 550 ATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTTT 609 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || ||||||||||| Sbjct 610 CCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475006487199600