Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq42503 141 8e-29 seq66674 140 3e-28 seq20317 136 4e-27 seq58440 113 4e-20 >seq42503 Length=950 Score = 141 bits (156), Expect = 8e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| |||| ||| || || ||||||||||| ||||||||||| Sbjct 637 ATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCT 696 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||||||||| || || | || || ||||| || || || Sbjct 697 GAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 756 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| |||||||| || || ||| | ||| | ||||| |||| ||| Sbjct 757 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 816 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||||| ||||||| || || ||||| |||||||| Sbjct 817 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||| |||||||| |||||| | ||| | ||| || ||||| Sbjct 436 TGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCTAATTGC 495 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || ||||||||| |||||| || || ||||| ||||| |||||||||||||| Sbjct 496 TTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTA 555 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | |||||| || | || ||||| || || | ||||| || || Sbjct 556 GCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTTTCCAGTG 615 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| ||||| Sbjct 616 AGGGTTTTAACGAAAATCTGCAT 638 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || || ||||||||||| |||||||| | ||| | ||| || Sbjct 202 ACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCT 261 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | ||||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 262 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGA 321 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | || | || || |||| |||||||| ||||| | ||||| Sbjct 322 ATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATAGTTTTA 381 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| || || |||||||||||||| Sbjct 382 CCAGTTAAGGTCTTGACAAAAATTTGCAT 410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || |||||||| || || | ||||||| ||||| || || ||||| ||||| || Sbjct 27 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTT 86 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| |||| || | || || |||| |||||||| ||||| | Sbjct 87 ATCTTGGATTTTAGCCTTGACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGAT 146 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || || |||||||| ||||| Sbjct 147 AGTTTTACCAGTTAAGGTCTTGACAAAAATYTGCAT 182 >seq66674 Length=28361 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| || || ||||||||||| ||||||||||| | |||| | | Sbjct 27889 CTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCCA 27948 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | || || ||||| || || || ||||| ||||| ||| Sbjct 27949 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 28008 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || ||| | ||| | ||||| |||| |||||||| ||||| | Sbjct 28009 TCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATT 28068 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || ||||| |||||||| Sbjct 28069 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | || || || || || || ||||||||||| |||||||| Sbjct 28102 ATTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCT 28161 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || |||||||| || || | ||||| ||||| ||||| || Sbjct 28162 GAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 28221 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| |||||||||||||| |||| ||| | ||||| |||| || Sbjct 28222 GGAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCC 28281 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||| || || |||||||| |||||||| ||||| Sbjct 28282 ACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| || || ||||||||||| || |||||||| | ||| | | Sbjct 27661 CTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCA 27720 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | || || ||||| || || || ||||| ||||| || Sbjct 27721 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTG 27780 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | || || |||| |||||||| ||||| | Sbjct 27781 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATT 27840 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| ||||| |||||||| Sbjct 27841 GTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | ||| || | || || || ||||| ||||| || ||||||||| Sbjct 27191 TTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGG 27250 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || ||| ||||||||||| || || | ||||| |||||||| || || | Sbjct 27251 ATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 27310 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 ||||||| || || ||||||||||| ||| | || | ||| || || | ||| | Sbjct 27311 GAATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAA 27370 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| | ||||| || || || ||||| || ||||| ||||| Sbjct 27371 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || || |||| ||||| ||| || || ||||| || ||||| || | || Sbjct 27430 AGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGT 27489 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || |||||||| || || | ||||| |||||||| || || ||||| |||||| Sbjct 27490 CCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCT 27549 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 || ||||||||||| || | ||||| || || |||| || ||||| ||||| Sbjct 27550 TTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTG 27609 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || ||||| || ||||| ||||| Sbjct 27610 ATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 >seq20317 Length=5186 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| || || ||||||||||| ||||||||||| | ||| | | Sbjct 1 CTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCA 60 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | || || ||||| || || || ||||| ||||| ||| Sbjct 61 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 120 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || ||| | ||| | ||||| |||| |||||||| ||||| | Sbjct 121 TCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATT 180 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || ||||| |||||||| Sbjct 181 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 118 bits (130), Expect = 1e-21 Identities = 169/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| |||| || || || ||||||||||| || || || ||| Sbjct 670 ATTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 729 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||||||| ||||| || | ||||| |||||||| || | Sbjct 730 --GACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTG 787 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || ||||| ||||| || || || |||| ||| | ||||| |||| | Sbjct 788 GGGGGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTT 847 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 | ||||| || || | ||||| || || |||||||| ||||| ||||||||| || Sbjct 848 CCACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATCCCG 903 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || || |||| ||| || || |||||||||||||| || || || Sbjct 442 ATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTC- 500 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | ||| ||||| || ||||| || | |||| || ||||| || | Sbjct 501 -TGACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTG 559 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||| ||||||||||| || || | ||| | ||| || || | | Sbjct 560 GGGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTT 619 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| |||| || || || || | |||||| ||||| || ||||| Sbjct 620 CAACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 >seq58440 Length=15377 Score = 113 bits (124), Expect = 4e-20 Identities = 323/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Plus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCA 123291 ||||||| ||||||| ||||| | | | | || ||||| || || |||| | Sbjct 4796 CCATGCTTCGAGTTTTTAATAATACGGCGAAATATGTTGACCAAGGTGGTAACAAAAGGC 4855 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATT 123351 ||||| | || || ||| ||||||| ||||| | ||||| | |||||| || | Sbjct 4856 CTGGCGCATTTGCAATTTATTTAGAACCTTGGCATGCGGATGTTTTTGATTTTCTAGAAC 4915 Query 123352 TA---AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTAT 123408 || ||| || | |||||| ||||| | | || | ||||| || || ||| | | Sbjct 4916 TACGTAAA---AATACGGGGGCTGAAGAGCAAAGGGCAAGGGATTTATTCTATGCTCTTT 4972 Query 123409 GGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTC 123468 || | || ||||| || ||| ||| || |||| || || | ||| || ||||||| Sbjct 4973 GGATTCCTGATTTATTCATGAAACGAGTGGAAGAGGATGGTATTTGGAGCCTTATGTGTC 5032 Query 123469 CCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGC 123528 | || ||||| || || || |||| || | | ||||| | | || Sbjct 5033 CTCATGAATGTCCAGGGTTAGATGATGTTTGGGGTGAAGATTTTGAGAAACTATATCTTA 5092 Query 123529 AATACGAGCGCGAAGGCAAA--CAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATT 123586 |||| ||| ||| |||| |||| | ||||| || || | | | ||| | Sbjct 5093 AATATGAGGATGAAAACAAATTCAGGC--GGCAGGTACCTGCTCATAAAGTGTGGGAGGC 5150 Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 || || ||| | ||| | ||||| || || || |||||| | ||||| ||| | ||||| Sbjct 5151 CATCATTGAATCGCAAATTGAAACTGGGACTCCCTACATGTTATACAAGGACTCTTGCAA 5210 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||||| | ||||| | ||||||||||| |||||||| |||| | || ||||||| Sbjct 5211 TCGGAAATCTAATCAAAAGAACTTGGGAACTATAAAATGCTCTAATTTATGTACCGAAAT 5270 Query 123707 TATCGAATACAGC 123719 | ||||| ||| Sbjct 5271 AGTAGAATATAGC 5283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451533314423400