Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20317 152 1e-31 seq62093 138 3e-27 seq66674 105 2e-17 seq65606 100 7e-16 seq65604 100 7e-16 seq42503 100 7e-16 >seq20317 Length=5186 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||||||| | ||||||||| || |||||||| | ||||||||| | ||| || | |||| Sbjct 685 CTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCA 744 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || |||| |||||||| || ||||| | ||| ||||| || || |||||||| Sbjct 745 TCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTA 804 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||| || ||| | ||||||| | ||| || || | ||||| Sbjct 805 TCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATG 864 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||||||||||||||| ||||| Sbjct 865 GTTTTACCCGTGAGAGTTTTCACAAAGATTTG 896 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| ||||||||| | |||||| | ||||||||||| |||| Sbjct 469 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGACAAAGTACGTCCATCTTCCAACTGC 528 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || ||||| || | |||||| || || ||||||||| || |||||||| Sbjct 529 TTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGAATTCCTTCCTTATCTTGAATCTTG 588 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | ||| |||| | ||| || || | ||| || ||||| || || Sbjct 589 GCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACCTCGAGCGTAATGGTCTTTCCAGTC 648 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| ||||| || || Sbjct 649 AAAGTTTTGACAAAGATCTG 668 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | || || |||||||||||||| | ||| ||||| | ||||| | ||| Sbjct 228 TCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCC 287 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || || || || | | |||||| || ||| ||||||||| Sbjct 288 ATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTT 347 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || || || ||| || ||| | ||||||| | ||| || || | ||||| Sbjct 348 ATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGAT 407 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| |||||||| || Sbjct 408 TGTTTTTCCAGTGAGAGTTTTAACAAAAATCTG 440 >seq62093 Length=56387 Score = 138 bits (152), Expect = 3e-27 Identities = 144/188 (77%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | ||| || |||| |||||||||||||||||| |||||||| || || ||| Sbjct 3527 CCTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAG 3586 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 |||||||| ||||| || ||| ||||||||| ||||| ||||| |||||| | Sbjct 3587 ATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTT 3646 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||| |||| | ||| || || | || || ||||| ||||| | |||||| || Sbjct 3647 TCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACG 3706 Query 199619 AAAATTTG 199626 || ||||| Sbjct 3707 AAGATTTG 3714 >seq66674 Length=28361 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| ||||| || || ||||||||||||| ||| || || | | || ||||| Sbjct 28116 TCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCC 28175 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| || | || || || || ||||| | ||| || ||||| || ||| ||||| Sbjct 28176 ATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 28235 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | ||||||| | ||| || || | ||||| Sbjct 28236 ATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGAT 28295 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| |||||||| || Sbjct 28296 GGTTTTTCCAGTCAGAGTTTTAACAAAAATCTG 28328 >seq65606 Length=3149 Score = 100 bits (110), Expect = 7e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||| |||| || | | || || || | |||||||||||||||| Sbjct 2293 AGGACGATGTGAAGACCAGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCT 2352 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||| || || |||||| ||| ||||| || ||| ||||||||| || Sbjct 2353 TCAAGCTGCTGGCCAGCAAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCT 2412 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || | ||| ||||| ||||| ||| |||| | ||| | || | | ||| ||| Sbjct 2413 TGGAGCTTAGTTTTCACATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTC 2472 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| | |||||| ||||| |||| Sbjct 2473 TTGCCCGTCAAAGTTTTGACAAAGATTT 2500 >seq65604 Length=3149 Score = 100 bits (110), Expect = 7e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||| |||| || | | || || || | |||||||||||||||| Sbjct 857 AGGACGATGTGAAGACCAGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCT 798 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||| || || |||||| ||| ||||| || ||| ||||||||| || Sbjct 797 TCAAGCTGCTGGCCAGCAAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCT 738 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || | ||| ||||| ||||| ||| |||| | ||| | || | | ||| ||| Sbjct 737 TGGAGCTTAGTTTTCACATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTC 678 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| | |||||| ||||| |||| Sbjct 677 TTGCCCGTCAAAGTTTTGACAAAGATTT 650 >seq42503 Length=950 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || |||||||| |||| ||||| || | | ||| ||||| Sbjct 423 TCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCC 482 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || || || || | | ||||| || ||| ||||||||| Sbjct 483 ATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTT 542 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | |||||||| | ||| || || | ||||| Sbjct 543 ATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGAT 602 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || ||||| || Sbjct 603 GGTTTTTCCAGTGAGGGTTTTAACGAAAATCTG 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177665398247055