Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27661 143 3e-29 seq20317 96.9 3e-15 seq42503 82.4 8e-11 >seq27661 Length=34041 Score = 143 bits (158), Expect = 3e-29 Identities = 309/460 (67%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||||||||| || |||||||| ||||||||||| ||||| || || | ||||| Sbjct 22431 TTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTT 22372 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||||||||| ||||| || | || ||| || | | | || || || || Sbjct 22371 TCCATAAAATCAAAGGGATTCTCAGTTAGGTAAATTTTCGGACAATTAAGCTCTACAAGA 22312 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || || || || || || | || |||||| ||||| || || || | ||||| || Sbjct 22311 AGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGTTCATTCCCAACATT 22252 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 || || || || || || || ||||| || || || || || || | ||| Sbjct 22251 CGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTCACGAATAATT 22192 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 || || || ||| || ||| || | | || | ||||| | || ||||| Sbjct 22191 TCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTCTAAACATAAGACAGGCAAAA 22132 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA--GTCAAGCCGGGCA 132961 || |||||| |||||||| || || || |||||||| ||||| || | ||||||| Sbjct 22131 TCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTT--TGAAAAGGTGAGACCGGGCA 22074 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||| || ||||| || | ||| ||||||| || || || |||||||||| ||||| Sbjct 22073 TGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAAGATGCCCT 22014 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 ||||||| || || || | | || || ||||| | ||| Sbjct 22013 CGACGGCAGCAAAGGCAATAATTCGATCTCCGAAGGAGGC 21974 >seq20317 Length=5186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| |||||||| ||||||||||| | || || || || | Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || ||| | | |||| || |||| || || || ||||| ||| | || | Sbjct 839 GACACGATTGAAAATG--TCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATC 782 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | || || || || |||| || | || || | |||||||| Sbjct 781 AGCAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACA 722 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||||||| | || || || || || ||| | |||||||| || Sbjct 721 ACATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGG 673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| | || || || ||||| || |||| || || || | Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | ||||| |||| | || || | || || || ||||||||| | || | Sbjct 612 AGATACCATTGAAAACG-TTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATC 554 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | || || | || || || ||| |||| || | || || | ||||||| Sbjct 553 AGCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACA 494 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||| | || || ||||| || | | |||||||| || Sbjct 493 ACATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGG 445 >seq42503 Length=950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| || ||||||||||| | || || || ||| | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | ||||| | || || || |||||||| | || || Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | || ||||| || | || || | | || || ||| ||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||| || | |||||||| || Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499652839113600