Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq24420 111 2e-19 seq24145 98.7 1e-15 >seq24420 Length=42041 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 153901 GATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCT 153960 |||||||||| || || || || || ||||| || ||||| || ||||||||||| || | Sbjct 33896 GATTAGCACTTCAAACCAGGGAACAACATATTAGAAGAGATAAGGCAACCAGTAATATAT 33955 Query 153961 GCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAG 154020 |||| |||| || || |||| ||||| |||| | | ||||||| || ||||| ||| Sbjct 33956 GCACCTCTCAAGCTCTTTTGGCAAATATTTCTGCAATGTATGCAGTTTACCATGGACCAG 34015 Query 154021 ATGGACTACATGCTATAGCAAGAAGAATT 154049 ||||| | | | ||| ||||||||||| Sbjct 34016 ATGGAATTCGAGAGATATCAAGAAGAATT 34044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 154867 CATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGA 154926 ||||||||||| | || || || || || | || || ||||| ||| || ||| Sbjct 35062 CATGTATTATGGTCACTTATCCGTCCACCAACGGAGTTTTTGATGCTACAATATCTGAGA 35121 Query 154927 TATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATG 154986 | ||| | | |||||||| ||||| || || || ||| | ||||| || ||| | || | Sbjct 35122 TTTGTCAACTTGTTCATGATAATGGAGGCCAAGTGTATTTAGATGGTGCTAATATGAACG 35181 Query 154987 CACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTAC 155046 | ||||| || || || | || || || | || || | |||| | || | | Sbjct 35182 CCCAGGTTGGTCTTTGTCGTCCGGGAGATTACGGCTCTGACGTTTCTCATTTGAATCTTC 35241 Query 155047 ATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 155086 ||||||| || |||||||||||||| ||||| |||||||| Sbjct 35242 ATAAAACTTTTTGTATTCCACATGGCGGTGGCGGTCCTGG 35281 >seq24145 Length=9760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 154874 TATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAA 154933 |||||||||||| || || || |||||||| |||||||| | | | || | || | Sbjct 1109 TATGATTACATATCCGTCGACCCATGGTGTGTTTGAAACCACTGTGCAAGAGGTTTGCGA 1050 Query 154934 GATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGT 154993 || |||| |||| || || || ||| |||| || || || | |||||| ||| Sbjct 1049 TATTACACATGCACATGGCGGCCAAGTCTATATTGACGGCGCTAACATGAATGCAATGGT 990 Query 154994 AGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAAC 155053 || ||| ||| ||| | || ||| | || ||| | || |||||| | |||||||| Sbjct 989 TGGCCTATCAAGACCTGGAGACATTGGCGGCGACGTAAGCCACCTAAACCTTCATAAAAC 930 Query 155054 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 ||||| || || ||||| || || || ||||| | || || || |||||| Sbjct 929 CTTCTGCATCCCTCATGGTGGCGGCGGCCCTGGTATGGGCCCGATTGGTGTA 878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||||| || || | || | ||||| ||||||||||||| || ||||| || Sbjct 2243 TGATATTGCCGTTGGATCGACACAGCGCTTTGGCGTTCCTATGGGATACGGCGGTCCACA 2184 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 ||| || | | ||||| | ||| ||||| | || || || ||| | ||| | || Sbjct 2183 TGCAGCGTATATGGCAACGAAAGATGCCTATAAACGTAACATGCCCGGCCGTATTATTGG 2124 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 ||| | ||| |||| |||||||||| | | ||| ||||||| || | ||||| Sbjct 2123 CGTATCAATTGATGCAAAAGGCAATAAAGCATTCCGCTTATCACTACAAACGCGCGAGCA 2064 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGC 153982 ||||| | | || ||||| | || | ||||||||||||||||| || || Sbjct 2063 ACATATTCGCCGTGAAAAAGCGATGTCAAATGTATGCACAGCTCAGGCACTCCTTGC 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578610672093600