Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq24145 113 5e-20 seq24420 111 2e-19 >seq24145 Length=9760 Score = 113 bits (124), Expect = 5e-20 Identities = 357/547 (65%), Gaps = 16/547 (3%) Strand=Plus/Minus Query 159242 AAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCAT 159301 |||| || ||||| | | ||| | | || ||||||||||| | ||| | || Sbjct 1416 AAATGATCGATGATCTCAATAAAAAGCTTTGCGATATCACAGGTTACGATGCGATTAGCC 1357 Query 159302 TACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCC--AAGCATA 159359 |||||| || |||| | || ||||| ||||| || || || | || | || || Sbjct 1356 AACAACCAAATTCAGGCGCGCAAGGTGAATATGCTGGGCTTTTGACCATTCGTAATTATC 1297 Query 159360 CCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGG 159419 |||| || || || | | | | ||| | || | || ||| ||||||||||| Sbjct 1296 ACATCGCAAAT--GGTGAGGGTCACCGTAATATCTGCCTCATTCCAACCTCAGCACATGG 1239 Query 159420 AACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGA 159479 ||| || || || || || ||||| ||| ||||||||| ||| | |||| Sbjct 1238 AACCAACCCCGCGTCCGCGCAGATGGTAGGCTGGAAAGTTGTTCCTGTTATCGCAGATGC 1179 Query 159480 TGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGC------AATCATGAATACATT 159533 || ||||| || ||| | | || || | || |||| ||| | | | ||| Sbjct 1178 AGAAGGCAATATTGACGTTGAGGA-CTTCAAAACAAAGGCCGAGAAATATTCGAAAGATT 1120 Query 159534 TGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACAT 159593 | | | | | ||||| |||||||||||| || || |||||||| |||||||| | | Sbjct 1119 T-AGCGGGC-TGTAT---GATTACATATCCGTCGACCCATGGTGTGTTTGAAACCACTGT 1065 Query 159594 CAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAA 159653 | || | || | ||| |||| |||| || || || ||| |||| || || || Sbjct 1064 GCAAGAGGTTTGCGATATTACACATGCACATGGCGGCCAAGTCTATATTGACGGCGCTAA 1005 Query 159654 TCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCT 159713 | |||||| ||| || ||| ||| ||| | ||| ||| | || ||| | || || Sbjct 1004 CATGAATGCAATGGTTGGCCTATCAAGACCTGGAGACATTGGCGGCGACGTAAGCCACCT 945 Query 159714 AAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTAT 159773 |||| | ||||| || ||||| || || ||||| || || || ||||| | || || || Sbjct 944 AAACCTTCATAAAACCTTCTGCATCCCTCATGGTGGCGGCGGCCCTGGTATGGGCCCGAT 885 Query 159774 TGGTGTA 159780 ||||||| Sbjct 884 TGGTGTA 878 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 158449 TTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 158508 ||||| |||||||||||||||| ||||| ||||| || | | ||||| | ||| Sbjct 2215 TTTGGCGTTCCTATGGGATACGGCGGTCCACATGCAGCGTATATGGCAACGAAAGATGCC 2156 Query 158509 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAA 158568 ||||| | || || || ||| | ||| | || ||| | ||| |||| |||||| Sbjct 2155 TATAAACGTAACATGCCCGGCCGTATTATTGGCGTATCAATTGATGCAAAAGGCAATAAA 2096 Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 |||| | | ||| ||||||| || | ||||| ||||| | | || ||||| | Sbjct 2095 GCATTCCGCTTATCACTACAAACGCGCGAGCAACATATTCGCCGTGAAAAAGCGATGTCA 2036 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGC 158657 || | |||||||| || ||||| || || Sbjct 2035 AATGTATGCACAGCTCAGGCACTCCTTGC 2007 >seq24420 Length=42041 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 158576 GATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCT 158635 |||||||||| || || || || || ||||| |||||||| || ||||||||||| || | Sbjct 33896 GATTAGCACTTCAAACCAGGGAACAACATATTAGAAGAGATAAGGCAACCAGTAATATAT 33955 Query 158636 GCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAG 158695 |||| | ||||| || |||| ||||| |||| | ||||||| || ||||| ||| Sbjct 33956 GCACCTCTCAAGCTCTTTTGGCAAATATTTCTGCAATGTATGCAGTTTACCATGGACCAG 34015 Query 158696 ATGGACTACATGCTATAGCAAGAAGAATT 158724 ||||| | | | ||| ||||||||||| Sbjct 34016 ATGGAATTCGAGAGATATCAAGAAGAATT 34044 Score = 107 bits (118), Expect = 2e-18 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 159542 CATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAAC--AAACATCAGACA 159599 ||||||||||| | || ||||| || || | || || ||||| | || ||| | | Sbjct 35062 CATGTATTATGGTCACTTATCCGTCCACCAACGGAGTTTTTGATGCTACAATATCTG--A 35119 Query 159600 GATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAA 159659 ||| ||| | |||||||||| ||||| || || || ||| | |||||||| ||| | || Sbjct 35120 GATTTGTCAACTTGTTCATGATAATGGAGGCCAAGTGTATTTAGATGGTGCTAATATGAA 35179 Query 159660 TGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTT 159719 || ||||| ||||| || | || || || | || || | |||| | || | Sbjct 35180 CGCCCAGGTTGGTCTTTGTCGTCCGGGAGATTACGGCTCTGACGTTTCTCATTTGAATCT 35239 Query 159720 ACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 159761 ||||| || || |||||||||||||| ||||| |||||||| Sbjct 35240 TCATAAAACTTTTTGTATTCCACATGGCGGTGGCGGTCCTGG 35281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587439884024400