Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20317 120 2e-22 seq66674 111 1e-19 seq17180 105 4e-18 seq42503 102 5e-17 >seq20317 Length=5186 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||||||||| || ||||| | ||| ||| || |||||||| ||||| | Sbjct 671 TTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 730 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| |||| || ||||| ||||| || | |||||||| ||| | | Sbjct 731 ACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||||| ||||| | | |||| || || || | Sbjct 791 GGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| ||||||||||| ||||||||||| ||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| || || || || |||| ||| ||| || || ||||| ||||| | Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| |||| ||| ||||| ||||| || |||| ||||| ||| | | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || |||||| || ||| | | || | || || |||| Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| || ||||| ||||| || | ||| || |||||||||||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| || | ||||| |||| || || || |||||||||||||| | Sbjct 215 TTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTG 274 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| || | ||||| || ||||| || | || ||||| ||| | | Sbjct 275 ATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAG 334 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || || || ||||| | | || | || || || | Sbjct 335 GAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCA 394 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || |||||||| |||||||| || ||||| |||||||| Sbjct 395 CTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 >seq66674 Length=28361 Score = 111 bits (122), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||| || | | | |||||||||||||| || |||||| ||||||||||| || Sbjct 27189 ATTTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATC 27248 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || | | ||| |||| |||| ||||| || ||||| || | |||||||| ||| | Sbjct 27249 GGATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGG 27308 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCC 34928 || | ||||||||||| ||| || ||| || || || || | ||| || | Sbjct 27309 AGGAATGCCCTCCTTGTCTTGAATTTTGGCTTTAAC--ATTCTCAATGGTATCAGAGGGC 27366 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | || || ||||| || ||||| || || || || ||||||||| Sbjct 27367 TCAACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| || ||||| || |||| || ||| || ||||||||||| || | Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTG 27706 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| |||| ||||| || ||||| |||| ||||| || ||| | | Sbjct 27707 AAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27766 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || ||| || | | || | ||| || || | Sbjct 27767 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGA 27826 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || || || || |||||||| ||||| Sbjct 27827 CTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || || || | |||| ||||| ||| || || || |||||||| || | Sbjct 28103 TTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 28162 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || | ||||| || ||||| || | ||||| |||||| | | Sbjct 28163 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 28222 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||| || ||||| | | || | || || || | Sbjct 28223 GAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCA 28282 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 28283 CTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 || ||||| || || | ||| ||||| |||||||||||||| || | | ||| || Sbjct 27433 CTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCA 27492 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || ||||| || | |||||||| ||| | || | || || ||| Sbjct 27493 TCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTG 27552 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||| || || || | |||| | ||| || ||||| || | || || Sbjct 27553 TCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATT 27612 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| || || || || |||||||| Sbjct 27613 GTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 >seq17180 Length=12851 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||| |||||||||||| | || |||| || | || ||||| ||||| | Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | |||||||| ||| | || | |||||||| || || || || || | Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACATTTT 4002 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || ||||||||| || | ||| || ||||| |||||||| |||||||| | Sbjct 4001 CGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACGA 3942 Query 34972 AGATCTGCATA 34982 | ||||||||| Sbjct 3941 AAATCTGCATA 3931 >seq42503 Length=950 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| || | ||||||||||| || || ||||| || || || || | Sbjct 410 TTCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGG 469 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || | || || || |||||||| | || |||||| ||| | | Sbjct 470 AAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAG 529 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||| || ||||| | | || | || ||| |||| Sbjct 530 GAATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAA 589 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||||||||| ||||| || || || || |||||||| Sbjct 590 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324304560006120