Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq58440 293 3e-74 seq27661 232 7e-56 seq4608 118 1e-21 >seq58440 Length=15377 Score = 293 bits (324), Expect = 3e-74 Identities = 575/837 (69%), Gaps = 22/837 (3%) Strand=Plus/Minus Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 |||||| || |||||| | ||||| |||| ||||| ||||| ||||| || | |||| Sbjct 5281 TATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGAT 5222 Query 47983 TA---TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCT 48039 || || ||| || | ||||||||| | ||| | || || |||||||| || | Sbjct 5221 TAGATTTCCGATTG---CAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTT 5165 Query 48040 GAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAA-CAGCTCTAGCTTTATTA 48098 | ||||||||||| | | ||| || | ||| || | || || ||| || Sbjct 5164 GCGATTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGC-CTGAATTTGTTT 5106 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 |||| || |||||| ||||| |||||||| || || || | |||| ||||||||| Sbjct 5105 TCATCCTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCT 5046 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 |||||||||| ||||||||| | |||| |||| | || |||| |||| ||| Sbjct 5045 GGACATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAAT 4986 Query 48219 ATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | ||| || ||||||||||| ||| ||||||||||| | ||| | |||||| || | Sbjct 4985 AAATCAGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGT 4927 Query 48278 ATTCCTTTTA---AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 ||| |||| ||||| ||||| || | | ||| |||||||| ||||||||||| || Sbjct 4926 ATT---TTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAAT 4870 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 ||| | | | || || | ||| ||||| ||||| || | |||| | || ||||| ||| | Sbjct 4869 TGCAAATGCGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAA 4810 Query 48395 AACTCTTAACATTGGGACAATACCATTTGA-TATACCATTGGTTCCCGAAATATAACTTC 48453 ||||| | ||| || ||||| ||||| || ||| |||||||| |||| ||||||| | Sbjct 4809 AACTCGAAGCATGGGTACAATCCCATTAGAGTAT-CCATTGGTCCCCGCAATATAAGAAC 4751 Query 48454 CACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | | |||| ||| | ||| |||||| || || || || ||| || || | | Sbjct 4750 CTTTTGCTCGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTG 4691 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 || |||| || ||||||||||| ||||| || ||| ||| |||||| || Sbjct 4690 CAGTTTGTTTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAATAAAA 4631 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | || || || | ||| || | || | | ||| || | ||| ||||| ||||| Sbjct 4630 AGCAGCTTGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTG 4571 Query 48634 TAAACCATTTCTCTGATA-ACAA-TTTATATGTTTCAATAACAGAATCTATATCCCATTG 48691 | || || | ||| | | || || || || | || ||| || ||||| | Sbjct 4570 TGAA--ATACCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCC 4513 Query 48692 ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTT 48748 || ||||||| ||| || | ||| | ||||| ||| || |||||||| | ||| || Sbjct 4512 GTGAATACCTACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTT 4456 Score = 205 bits (226), Expect = 1e-47 Identities = 465/700 (66%), Gaps = 15/700 (2%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAAT 47022 ||||| || ||| ||||| || |||| ||| | | || ||||| ||| || || | || Sbjct 6379 TAATTCGTGATTTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGAT 6320 Query 47023 AATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAG 47082 ||||||| || || || || || | |||| || ||||||||||| || | ||| Sbjct 6319 AATACATCCCTGTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTC 6260 Query 47083 AATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTC 47142 || |||| | || ||||| || || | |||||||| ||||||||||| || || | Sbjct 6259 CGTAGTTAGGCTGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGC 6200 Query 47143 TATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTT 47202 |||||| ||||| | | | | |||| | || ||||| ||||||||||||| | Sbjct 6199 GATCAGCAGCCATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCT 6140 Query 47203 GTTTAATGTCTTCTGGGA---GATTAGTATTTTGAATAGATCC----TCCgttttctata 47255 ||||| || || || | || | ||||||| | ||||| |||| | ||| Sbjct 6139 TCTTAATATCGTCAGGAATTTGAGGAATATTTTGTACGGATCCATTATCCG----CAATA 6084 Query 47256 attttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 || || | ||| | ||| | |||||| | ||||| || | | || | ||| Sbjct 6083 ATATTTTGTTTCATTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGT 6024 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 |||| |||||||||||||| || |||| || | | | || ||||| ||| ||| Sbjct 6023 TGATTCACAATTTGAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTAT 5964 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 | || || |||||| || || | ||||| || || || || || ||||||| ||| Sbjct 5963 GCCTCAATTCCTTCATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCA 5904 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | | | | ||| | |||||| | ||| || | | ||||||| Sbjct 5903 AGAAGAAGGGAATTCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCC 5844 Query 47496 CAAAGATCTGATGG---AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATC 47552 || | || || || |||| | | ||||| |||| |||| || | |||| ||||| Sbjct 5843 CACATATTTGTGGGGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACT 5784 Query 47553 GGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCC 47612 ||||| || |||||||| | || | || || ||| ||||||||||| ||||| Sbjct 5783 GGAGATCCTTTATATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCT 5724 Query 47613 AATGCACTATAATATATTGTTTCAAATATTTTTATGTTTA 47652 || |||| || || || ||||||||||||| | |||||| Sbjct 5723 AAGGCACCGTAGTAAATAGTTTCAAATATTTGTTTGTTTA 5684 >seq27661 Length=34041 Score = 232 bits (256), Expect = 7e-56 Identities = 342/474 (72%), Gaps = 24/474 (5%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || ||| ||||||||||| |||| |||||||||| ||||| ||||| || || Sbjct 22444 CATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATC 22385 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACA-TTATATAtttttttG---A 18772 | ||| ||| ||||||||||||||| ||||| | || ||| || |||| | | Sbjct 22384 AAGTGAAATATTTTCCATAAAATCAAAGGGATTCT---CAGTTAGGTAAATTTTCGGACA 22328 Query 18773 ATCCTAAT-TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCAT---A 18828 || ||| |||| || |||||||| || ||||||||||||||| | || ||| | Sbjct 22327 AT--TAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCATGGAA 22273 Query 18829 TCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATA 18888 ||||| |||||||| | | | ||| || ||||| || || |||||||| ||| || Sbjct 22272 TCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATC 22213 Query 18889 TTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGG--TAT-AG-AAG 18944 || ||||| ||||| |||| | | | | ||| || ||| || ||| Sbjct 22212 GCAACAGCCTCACGAATAATTTCGACAATACGAGCCAC----GGATGGCTTATGAGCAAG 22157 Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||| ||||||| | ||| |||||||| ||| | ||||||||||||| ||| | ||| Sbjct 22156 GTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTC 22097 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 || ||||| || | ||| ||||| ||||| | ||| |||||||||||||| |||||||| Sbjct 22096 GTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAA 22037 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 ||| || |||||||| || || || || || ||||| |||| | || ||||| Sbjct 22036 TGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 >seq4608 Length=17199 Score = 118 bits (130), Expect = 1e-21 Identities = 468/727 (64%), Gaps = 17/727 (2%) Strand=Plus/Minus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 |||| ||||| | || ||||| ||| || |||| |||| || || | || ||||| Sbjct 12955 ATGAACCCTATACAACCCATGTTAGCACAAGCATGCAAATCAGTGGACATGGCTTTTAAG 12896 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 |||||||| || || || | | ||||| |||||||| || || | || ||| | ||| Sbjct 12895 AAGTTTCCCAAGGGTATGTACTCTGAAATCAAATATGATGGGGAGAGGGTTCAGCTACAC 12836 Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813 || ||| || | ||||| | |||| | ||| | || || |||| ||||||| Sbjct 12835 AAACGTGGCAAAGAGTTTGCTTATTTTTCTCGAAGTTTAAAGCCTGTAATGGCACATAAA 12776 Query 136814 GTTGATTATCTT-AATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTTT 136872 || || || || || |||||||| || |||| ||| ||| ||| | | || | Sbjct 12775 GT-GAAAATATTCAAGGAGTATATTCCAGAAGCATTTCCTGATGGATCTGATTTGATACT 12717 Query 136873 AGATTCAGAAATAGTACTAGTAGATAAAAATAATAAA---CCATTACCATTTGGCAGTTT 136929 |||| | || || | | || ||||| || | | || |||| |||||| || Sbjct 12716 AGATGCTGAGGTACTCATGGTTGATAATAAAACCGGAGATCCTCTACCTTTTGGCTCATT 12657 Query 136930 GGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTG 136989 ||| | |||||| | || || ||| || | | ||| | ||| | |||||||| Sbjct 12656 AGGTGTTCATAAAGGCTCAGGATTCAAAGATGCAACGCCTTGTCTTTTTATTTTTGATTG 12597 Query 136990 TTTGTTTTTTGATGGGTTTGATATGACAGATATTCCTCTAAATGATAGACGATCGATTCT 137049 | | | | | || || | | |||| || | |||||||| || | || | Sbjct 12596 CATCTACTATAACGGAGAAAATCTCATGGATAAACCCATTCATGATAGAAGAAAGCTTTT 12537 Query 137050 ---TCAAGAAATAATAGTAGAAATTCCTAATAGAATAATGTTATCAGAACTATATGTGGT 137106 |||| | || || ||| || ||| |||| ||| |||||| | | || | Sbjct 12536 ATCTCAACACATG---GTCGAAGTTGGGAATTACATAAAGTTTTCAGAAATGAAGGTCAT 12480 Query 137107 TAAGGAAATTAATC--AATTATCTAATATACTAGATAATGTATTATCACAAAAGT-TAGA 137163 |||| ||| | || | || | || | | |||| | | | ||| || | || Sbjct 12479 TAAGAAAA--AGTCCGAGTTGGGAGAAATGATTCAAGATGTTCT-TAAGAAAGGTCTGGA 12423 Query 137164 AGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAAAATGGTTAAA 137223 |||||| || | |||||||||||| || |||| || || || || | ||| | || Sbjct 12422 AGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTTAA 12363 Query 137224 GATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACTTAGTAGTATT 137283 | | ||||| |||||||||||| |||| || | || ||| || ||||| || || || Sbjct 12362 GGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTTTT 12303 Query 137284 AGGTGCTTATTATGGTAAAGGATCAAAGGGTGGTATAATGGCTGTATTTTTAATGGGATG 137343 |||| | | ||||| |||| ||||||||| || || ||||||| ||||| || Sbjct 12302 GGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCATATTTTTGATGGGTTG 12243 Query 137344 TTATGAT 137350 || ||| Sbjct 12242 CTACGAT 12236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561524452770600