Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq27661 127 2e-24 seq4608 114 2e-20 >seq27661 Length=34041 Score = 127 bits (140), Expect = 2e-24 Identities = 328/495 (66%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTC--CTTATTACTATTCATAACTCCCATT 36884 ||| ||||| |||||||||||||||| ||| || | | |||||| ||| Sbjct 22489 TTAGAAATCGGCATCTAACGTAAATTTACGTTCAGCTGGCTTGGA--CATAACACCCGCC 22432 Query 36885 TTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTT 36944 ||||||||||| ||||| | |||| |||||||| || || || || ||||| |||||| Sbjct 22431 TTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTT 22372 Query 36945 TCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTC-AG 37003 |||||||||||||| ||||| || || || | ||| ||| || | || Sbjct 22371 TCCATAAAATCAAAGGGATTCTCAGTTAGGTAAATTTTCGGACA-ATTAAGCTCTACAAG 22313 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 ||| ||||| |||||||||| || |||| ||| ||| |||| || || | | Sbjct 22312 AAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGTTCATTCCCAACAT 22253 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 | || || | ||| || |||||| |||| || ||||| || || || Sbjct 22252 TCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTCACGAATAAT 22193 Query 37124 ATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAA 37183 | |||||| | | | ||| || | | | |||||| | ||| ||||| Sbjct 22192 TTCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTCTAAACATAAGACAGGCAAA 22133 Query 37184 ATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCAT 37243 ||| ||| || || || |||||| ||| | ||| || |||||||| | || ||||| Sbjct 22132 ATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGGTGAGACCGGGCAT 22073 Query 37244 TAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTC 37303 | || | ||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 22072 GAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAAGATGCCCTC 22013 Query 37304 AACTGCTGCAAATGC 37318 || || ||||| || Sbjct 22012 GACGGCAGCAAAGGC 21998 >seq4608 Length=17199 Score = 114 bits (126), Expect = 2e-20 Identities = 365/555 (66%), Gaps = 27/555 (5%) Strand=Plus/Minus Query 142376 AATAAAGGTTTAGAAGGA--GCTATTTTAAAATATCCAAATGATATGTATATACCAGGTA 142433 || |||||| | |||||| | || | || ||||| ||| || ||| || || | Sbjct 12436 AAGAAAGGTCTGGAAGGATTGGTACTCAAAGATATC--AATTCTACTTATGAGCCGGGGA 12379 Query 142434 AAAGAAAATGGATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAG 142493 | || | ||| | ||| | |||| ||||| || || ||||| |||||||||||| | | Sbjct 12378 AGCGACATTGGCTTAAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTG 12319 Query 142494 CAGATTTAGTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGT 142553 | || || || || ||||||| || | ||||| ||| ||| | || ||||| || Sbjct 12318 CTGACTTGGTTGTTTTGGGTGGATGGTTTGGTACAGGACAAA---AGGGTGGGATCGTGA 12262 Query 142554 CTATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTACAAAAT 142613 |||||| | |||||||| || ||| || || | ||||| ||||| || ||| Sbjct 12261 GCATATTTTTGATGGGTTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAG 12203 Query 142614 GTTC----AGGATTCAATGATGAAACATTAAAGGAATTACA-GTCAATTGATA-TGATAA 142667 |||| |||||| |||| | || | |||| |||| | ||| ||| || || Sbjct 12202 GTTCATGGAGGATTTGATGACGCTACTCTGGAGGATCTACAGGACAA--AATAGTGCCAA 12145 Query 142668 AAATCAGTAAAAATAAAG------ATAA---AATACCAACATGGTTAAATATTAACAG-T 142717 ||| | || | |||| || | | ||| ||||| | || |||||| Sbjct 12144 TAATGAAGAAGATCAAAGGAGACTATGACTCTGTTCCATCATGGCTGAAATGTAACAGAG 12085 Query 142718 ATACATTATCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAATATCC 142777 | | | ||| || |||||||| ||| |||| || ||||||||||| ||| | Sbjct 12084 GTGTAGT-TCCTGACTTTATTGTCAATGATCCTAAGGTTATGCCTGTTTGGGAGATAACT 12026 Query 142778 GGATATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCT 142837 || ||||||| ||||||| |||||||||| |||| ||||| ||| | || || Sbjct 12025 GGTGCTGAATTTTCAAAATCGGATATTCATACAGCAAATGGAATATCCATTCGTTTCCCC 11966 Query 142838 AGATGTAAAAATATAAGAAATGATAAAGATTGGTTATCTGCAACAAATTTACAGGAACTT 142897 | || ||| ||| || |||||| ||||| | | ||||| ||| | ||||| | Sbjct 11965 CGCGTTACAAAGCAAAGGAAGGATAAAAATTGGAAAACGGCAACTAATCTTGAGGAATTG 11906 Query 142898 ATAACATTATATAAA 142912 || || | |||||| Sbjct 11905 ATTGCACTCTATAAA 11891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591701049666600