Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_018271.1 Length=35700 Score E Sequences producing significant alignments: (Bits) Value seq36672 87.8 4e-13 seq22154 87.8 4e-13 seq22153 87.8 4e-13 >seq36672 Length=19642 Score = 87.8 bits (96), Expect = 4e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 32811 TTTACACTATCTAAAGCAATTGCAATACCGCCAGAACCTAAATGCGTGTCAAGTATTTTC 32870 |||| | ||| ||||||||||||| ||||||||||||| || || |||||||| Sbjct 1868 TTTAGATTATGACAAGCAATTGCAATTGATGCAGAACCTAAATGAGTATCTAGTATTTTA 1809 Query 32871 CATCCTTCCTTTGCATATTCTGTCAATATCCATTGGTAAAGTGGTACAGGTTTTTGAGTT 32930 ||||| || || |||| ||||||| ||||| ||| | ||| |||||||||||| Sbjct 1808 TCACCTTCTTTAGCGTATTTCGTCAATAACCATTCGTATAACTTTACTGGTTTTTGAGTT 1749 Query 32931 GGGTGTAT 32938 || || || Sbjct 1748 GGATGAAT 1741 >seq22154 Length=8790 Score = 87.8 bits (96), Expect = 4e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 32811 TTTACACTATCTAAAGCAATTGCAATACCGCCAGAACCTAAATGCGTGTCAAGTATTTTC 32870 |||| | ||| ||||||||||||| ||||||||||||| || || |||||||| Sbjct 7594 TTTAGATTATGACAAGCAATTGCAATTGATGCAGAACCTAAATGAGTATCTAGTATTTTA 7535 Query 32871 CATCCTTCCTTTGCATATTCTGTCAATATCCATTGGTAAAGTGGTACAGGTTTTTGAGTT 32930 ||||| || || |||| ||||||| ||||| ||| | ||| |||||||||||| Sbjct 7534 TCACCTTCTTTAGCGTATTTCGTCAATAACCATTCGTATAACTTTACTGGTTTTTGAGTT 7475 Query 32931 GGGTGTAT 32938 || || || Sbjct 7474 GGATGAAT 7467 >seq22153 Length=8843 Score = 87.8 bits (96), Expect = 4e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 32811 TTTACACTATCTAAAGCAATTGCAATACCGCCAGAACCTAAATGCGTGTCAAGTATTTTC 32870 |||| | ||| ||||||||||||| ||||||||||||| || || |||||||| Sbjct 7647 TTTAGATTATGACAAGCAATTGCAATTGATGCAGAACCTAAATGAGTATCTAGTATTTTA 7588 Query 32871 CATCCTTCCTTTGCATATTCTGTCAATATCCATTGGTAAAGTGGTACAGGTTTTTGAGTT 32930 ||||| || || |||| ||||||| ||||| ||| | ||| |||||||||||| Sbjct 7587 TCACCTTCTTTAGCGTATTTCGTCAATAACCATTCGTATAACTTTACTGGTTTTTGAGTT 7528 Query 32931 GGGTGTAT 32938 || || || Sbjct 7527 GGATGAAT 7520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114005698451260