Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_018272.1 Length=35652 Score E Sequences producing significant alignments: (Bits) Value seq36672 102 2e-17 seq22154 102 2e-17 seq22153 102 2e-17 >seq36672 Length=19642 Score = 102 bits (112), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 18453 ATACACCCGACCGAAAAACCAATACAGCTTTATGAATGGCTATTAGAC-ACTTATGCAAA 18511 || || || || |||||||| || || | || |||||| |||| ||| | || || || Sbjct 1741 ATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGGTTATT-GACGAAATACGCTAA 1799 Query 18512 GAAAGGTTTTAAAATATTAGACACACATTTAGGAAGTGGCTCAATCGCATTAGCGTGCCA 18571 ||||| ||||||| |||| || |||||||| || ||||| ||| | || || || Sbjct 1800 AGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGTCA 1859 Query 18572 TAATAGAGGGTTTGATTTAACTGCTTGCGAACTAGATACCGAC-TACTACAACGCAGCAA 18630 |||| | || |||||||||||||| ||||| ||| || || || ||| | |||| Sbjct 1860 TAATCTAAAATTCGATTTAACTGCTTGTGAACTGGAT-CCAACTTATTACTCAGATGCAA 1918 Query 18631 TGAAAAGACTTAAACAACACCAATCACAACAAACACTATTTTAAAATGAAAA 18682 | | |||| | || | ||| || |||| ||| || |||||| ||| ||| Sbjct 1919 TAAGAAGAATAGAAGACCACAAAGCACAGTTAACCCTTTTTTAACATGGAAA 1970 >seq22154 Length=8790 Score = 102 bits (112), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 18453 ATACACCCGACCGAAAAACCAATACAGCTTTATGAATGGCTATTAGAC-ACTTATGCAAA 18511 || || || || |||||||| || || | || |||||| |||| ||| | || || || Sbjct 7467 ATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGGTTATT-GACGAAATACGCTAA 7525 Query 18512 GAAAGGTTTTAAAATATTAGACACACATTTAGGAAGTGGCTCAATCGCATTAGCGTGCCA 18571 ||||| ||||||| |||| || |||||||| || ||||| ||| | || || || Sbjct 7526 AGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGTCA 7585 Query 18572 TAATAGAGGGTTTGATTTAACTGCTTGCGAACTAGATACCGAC-TACTACAACGCAGCAA 18630 |||| | || |||||||||||||| ||||| ||| || || || ||| | |||| Sbjct 7586 TAATCTAAAATTCGATTTAACTGCTTGTGAACTGGAT-CCAACTTATTACTCAGATGCAA 7644 Query 18631 TGAAAAGACTTAAACAACACCAATCACAACAAACACTATTTTAAAATGAAAA 18682 | | |||| | || | ||| || |||| ||| || |||||| ||| ||| Sbjct 7645 TAAGAAGAATAGAAGACCACAAAGCACAGTTAACCCTTTTTTAACATGGAAA 7696 >seq22153 Length=8843 Score = 102 bits (112), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 18453 ATACACCCGACCGAAAAACCAATACAGCTTTATGAATGGCTATTAGAC-ACTTATGCAAA 18511 || || || || |||||||| || || | || |||||| |||| ||| | || || || Sbjct 7520 ATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGGTTATT-GACGAAATACGCTAA 7578 Query 18512 GAAAGGTTTTAAAATATTAGACACACATTTAGGAAGTGGCTCAATCGCATTAGCGTGCCA 18571 ||||| ||||||| |||| || |||||||| || ||||| ||| | || || || Sbjct 7579 AGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGTCA 7638 Query 18572 TAATAGAGGGTTTGATTTAACTGCTTGCGAACTAGATACCGAC-TACTACAACGCAGCAA 18630 |||| | || |||||||||||||| ||||| ||| || || || ||| | |||| Sbjct 7639 TAATCTAAAATTCGATTTAACTGCTTGTGAACTGGAT-CCAACTTATTACTCAGATGCAA 7697 Query 18631 TGAAAAGACTTAAACAACACCAATCACAACAAACACTATTTTAAAATGAAAA 18682 | | |||| | || | ||| || |||| ||| || |||||| ||| ||| Sbjct 7698 TAAGAAGAATAGAAGACCACAAAGCACAGTTAACCCTTTTTTAACATGGAAA 7749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113852250144220