Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq66674 197 1e-45 seq42503 194 1e-44 seq20317 185 7e-42 >seq66674 Length=28361 Score = 197 bits (218), Expect = 1e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | ||||||||||||||| |||||||| ||||| || || ||||| | Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTG 27706 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| |||||||| ||||| ||||| || ||||| |||||||| || | Sbjct 27707 AAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27766 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||||||||| ||| ||| |||| | ||| ||||| | ||| | Sbjct 27767 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGA 27826 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 27827 CTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 188 bits (208), Expect = 6e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | || ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 27875 TTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTG 27934 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| |||||||| ||||| ||||| || ||||| |||||||| || | Sbjct 27935 AAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27994 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||| || || ||| ||| |||| | ||||| || | ||| | Sbjct 27995 GAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGA 28054 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||| |||||||| || || ||||| || ||||| Sbjct 28055 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 174 bits (192), Expect = 1e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | || ||||| || |||||||||||||||||||| || || ||||| Sbjct 27189 ATTTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATC 27248 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 || | ||| | |||| |||||||| ||||| ||||| |||||||| || ||||| || Sbjct 27249 GGATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGG 27308 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||| || || ||||||||||| ||| ||| | || | || ||||| | || Sbjct 27309 AGGAATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTC 27368 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||||| ||||| || || | ||||| || || |||||||| Sbjct 27369 AACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | | || | |||||||| || || ||||| || || ||||| | Sbjct 28103 TTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 28162 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || ||||| ||||| ||||| |||||||| ||||| || || | Sbjct 28163 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 28222 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||||||||| || ||| |||| | ||||| || | ||||| Sbjct 28223 GAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCA 28282 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| |||| ||||| || || | |||||| ||||| |||||||| Sbjct 28283 CTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | | |||||||||||| | || || |||||||| || || || || | Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGAT 27480 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 27481 AAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27540 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| || ||| |||||| ||| ||||| | ||| ||| Sbjct 27541 ATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACT 27600 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| ||||| || || | ||||| || || |||||||| Sbjct 27601 TCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 >seq42503 Length=950 Score = 194 bits (214), Expect = 1e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | || ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 638 TTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTG 697 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| |||||||| ||||| ||||| || ||||| |||||||| || | Sbjct 698 AAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 757 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||| || || ||| ||| |||| | ||||| || | ||| | Sbjct 758 GAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGA 817 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||| |||||||| || || ||||| || ||||| Sbjct 818 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | ||| || |||||||| || || || || ||||||||||||| Sbjct 410 TTCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGG 469 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| || |||||||| || ||||||||||| | || ||||| || | Sbjct 470 AAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAG 529 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||||||||| || ||| |||| | ||||| || | ||| | Sbjct 530 GAATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAA 589 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| |||| ||||| || || | ||||| || || |||||||| Sbjct 590 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Score = 172 bits (190), Expect = 4e-38 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 | |||||||| || | | ||||| |||||||| || || ||||| || || ||||| | Sbjct 182 TYCCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 241 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || ||||| ||||| ||||| |||||||| ||||| || || | Sbjct 242 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 301 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||||||||| || ||| | || | ||| ||||| | ||| | Sbjct 302 GAATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGA 361 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||| || ||||| || || ||||| || ||||| Sbjct 362 CTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 410 Score = 127 bits (140), Expect = 2e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| || ||||| ||||| ||||| ||||| | ||| ||||| || ||||| ||||| | Sbjct 26 CATCTTCTAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCT 85 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| ||||| || ||| | || | ||| ||||| | ||| ||||||||||||| Sbjct 86 TATCTTGGATTTTAGCCTTGACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGA 145 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| || || ||||| || ||||| Sbjct 146 TAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGCAT 182 >seq20317 Length=5186 Score = 185 bits (204), Expect = 7e-42 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || ||||||||||| || ||||| ||||| ||||| ||||| | | |||||| |||| Sbjct 4 AATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCT 63 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||| ||||| ||||| || ||||| |||||||| || ||||| ||||| |||||| Sbjct 64 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCT 123 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||| ||| |||| | ||||| || | ||| ||||||||||||| ||| Sbjct 124 TGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTT 183 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || || ||||| || ||||| Sbjct 184 TTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 167 bits (184), Expect = 2e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | || ||||||||||| || || ||||| || || || || | Sbjct 215 TTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTG 274 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || ||||| || || ||||| ||||| | ||| ||||| || | Sbjct 275 ATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAG 334 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||| ||||| || ||| |||| | |||||| || | ||||| Sbjct 335 GAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCA 394 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||| ||||| || || | |||||| ||||| |||||||| Sbjct 395 CTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | ||| |||||||||||||| ||||| ||||| || ||||| || | Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| ||||| || ||||| |||| | ||| ||||| || | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| ||||||||||| || || || |||| | || || || | ||| | Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || | || || || || |||||||| ||||| |||||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | ||||| || || || ||||| ||||| || ||||| |||| Sbjct 671 TTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 730 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| ||||||||||| || ||||| |||||||| || ||||| || | Sbjct 731 ACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||| || || || || ||| |||| | ||||| || | ||||| Sbjct 791 GGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| |||| ||||| || || | |||||| ||||| || ||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395876742739905