Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20317 113 3e-20 seq66674 100 2e-16 seq17180 89.7 4e-13 seq42503 87.8 1e-12 >seq20317 Length=5186 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || ||| || ||||| || ||||| || || | | | || | || Sbjct 460 AATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGACAAAGTACGTCCATCT 519 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||||||||| || ||||| ||||||| ||| ||||| | ||||| || ||||| || Sbjct 520 TCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGGAATTCCTTCCTTATCT 579 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| || || | | | ||||| | || ||||| | |||||| || Sbjct 580 TGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAACCTCGAGCGTAATGGTC 639 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||||||||| ||||| |||||||| Sbjct 640 TTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| |||||||| || || || |||| | | || | || || Sbjct 235 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCTTCT 294 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| |||| || ||| ||||| | |||| || ||||| || Sbjct 295 AATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 354 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | || ||||| || ||||| || | || || |||||| Sbjct 355 ATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACTTCAAGAGTGATTGTTTTT 414 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| |||||||||||||| Sbjct 415 CCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| || ||||||||||| ||||| || ||| ||| | || Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| || ||||| ||||| || | || |||||||| | ||||| || ||||| || Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | ||||| || || || || | || || || Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || || ||||| || ||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 >seq66674 Length=28361 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||||||||||| || ||||| |||| | | || Sbjct 27202 AGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGT 27261 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| ||||| |||| || || ||||| | |||| ||||||| Sbjct 27262 CCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCC 27321 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || | ||| || || | || Sbjct 27322 TTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTG 27381 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||| || ||||||||||| Sbjct 27382 ATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| ||| ||||| || || ||||| || || ||| | || || Sbjct 28123 ACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCT 28182 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| |||| || ||||| || | ||||| || ||||| || | Sbjct 28183 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGA 28242 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||| || ||||| || | || || |||||| Sbjct 28243 ATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTT 28302 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| |||||||||||||| Sbjct 28303 CCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| || ||||||||||| ||||| || || ||| | || Sbjct 27891 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCCATC 27950 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| || ||||| ||||| || | || |||||||| | ||||| || ||||| || Sbjct 27951 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 28010 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | ||||| || || || || | || || || Sbjct 28011 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 28070 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || || ||||| || ||||| Sbjct 28071 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 >seq17180 Length=12851 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||||||||| ||||| || || || | || | || || || ||||| || ||||| | Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTA-CAGAA 48695 ||| || || ||||| | |||| |||||||| || || ||| || ||| || Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGAT-TTTGGTCTTAACATTT 4003 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||||| ||||| | ||||| ||||| ||||| | || || || Sbjct 4002 TCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACG 3943 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 3942 AAAATCTGCAT 3932 >seq42503 Length=950 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| || ||||||||||| ||||| || || ||| | || Sbjct 654 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGNGTTCTTCCATC 713 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| || ||||| ||||| || | || |||||||| | ||||| || ||||| || Sbjct 714 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 773 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||| ||| | | | ||||| || || || || | || || || Sbjct 774 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 833 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || || || ||||| || ||||| Sbjct 834 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || ||||||||||| || ||| ||| | || || Sbjct 430 ACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAAAGAGTTCTTCCATCTTCT 489 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || |||||||||| || || ||||| | |||| || ||||| || | Sbjct 490 AATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 549 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||| || || || || | || || |||||| Sbjct 550 ATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACTTCAAGTGTGATGGTTTTT 609 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || ||||||||||| Sbjct 610 CCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380551491767295