Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq76374 100 7e-17 >seq76374 Length=18478 Score = 100 bits (110), Expect = 7e-17 Identities = 367/569 (64%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 27604 TCGTTGCCCCATACCTCGTGACCGAACCATGGCTCGCGGGCGAAGAGCTCGCAGCAATAC 27663 || |||||||| || || || || ||||| ||| |||||||| |||||| ||||| Sbjct 13258 TCATTGCCCCACACATCATGGCCTTGCCATGACTCACGGGCGAAAAGCTCGGCGCAATGG 13317 Query 27664 GCGTGCGGCAGGAGGCGCTCGATCATCTCGCGCATCTGGTCGGGTTTGCGGGAATGCTCG 27723 ||| ||||| || ||||| |||||| ||||| | ||||||||||| |||||||| Sbjct 13318 GCGGTCGGCAAAAGCCGCTCAATCATCATTCGCATATCATCGGGTTTGCGCGAATGCTCT 13377 Query 27724 CGCCGGATCGCCTCGATCGAATCCGGAATCTGCTCGTCGGCGACGATCACGTTGCGCTCG 27783 || | || || |||| | |||||| | | |||||||||||||| Sbjct 13378 CGAAAGCGAGCTTCAATCG-CGCTATAATCTGTT--------TCAATCACGTTGCGCTC- 13427 Query 27784 GTGCGCGACACG-GTCTTCGGGCGGTTC-AGTTTGCCGACCAGGAAAGGCTCGGTCGCGG 27841 || | ||| | ||| ||||| | | || || | || | |||||||| | | Sbjct 13428 -TGATTTAGACGTGACTTTGGGCGACCCTATCTTTCCAATCAAATACGGCTCGGTTGATG 13486 Query 27842 AATGCAGCACGTAGCCCGTGCCGAAGCAGACCTTCCAGT-TCCTGTTCGTGCGCTTCGTC 27900 | ||||| || ||||| || || | || | || | |||| | || || Sbjct 13487 ATCTAAGCACATAACCCGTTCCAAAAGCGTTTTTGCCGTGTTTTGTTTTT----TTGATC 13542 Query 27901 CAGGATCCGCCGGTAATGTAGGTGAAGCCCCAGTCGGCCATCAGCTTCAGAGCGACATTC 27960 || | ||||| ||||| || |||| ||||| || ||||| || | || || Sbjct 13543 CATGCGCCGCCCGTAATATACTTGAACTCCCAGGCGTTCATCACCTCTAAGGCCTGTGTC 13602 Query 27961 AGATGCGGCCAGGTCGACCACATGAATAGCATGCAGTCGGGGCCCGCCAGCTGCTCGACG 28020 || |||||||| || ||||| | || |||| ||||| |||| | | || Sbjct 13603 AGGTGCGGCCATGTTGACCATAAAAAGAGCAAGCAGTTCTTTGAGGCCAAATCTTGCACA 13662 Query 28021 GGGAGCGCGCTCAGATCCGCCACCGACATCGTGTCGTAATGCGCCTCGGGGCTCTTCGCG 28080 |||||||| | | ||| || | ||| || || ||||||| || ||| || Sbjct 13663 GGGAGCGCTTTAATATCGGCGATATCCATGGTCTCATAATGCGATTCAGGGGATTTTTTA 13722 Query 28081 TGCCCCTTCTCGGAGCGCATCACATAAGCCCAGGGCGGATCCGCGAGGATCGCGCCATAT 28140 | ||||| | | ||||| || ||| || ||||| || | |||||| |||| Sbjct 13723 TAACCCTTTTTGCTTCGCATTTTGTAGCGCCACGGTGGATCAGCTAAGATCGCATCATAC 13782 Query 28141 TTCATGGGGGTAAGGGGATCGAAGGGCCA 28169 |||| || |||||||| || |||||||| Sbjct 13783 TTCAGCGGCGTAAGGGGTTCAAAGGGCCA 13811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126387058725550