Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq58440 125 4e-24 >seq58440 Length=15377 Score = 125 bits (138), Expect = 4e-24 Identities = 288/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| |||||||| | ||||| |||||||| || || || ||||| Sbjct 4992 CATGAATAAATCAGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTGCTCTTCAGC 4933 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| || ||| |||| |||||||||| ||| | ||||| ||||||||||| Sbjct 4932 CCCCGTATTTTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATA 4873 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| || ||||| |||||||| || || ||| | || || | ||| Sbjct 4872 AATTGCAAATGCGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATT 4813 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 |||||| | ||| || || | ||| | || |||| || || | ||| | || Sbjct 4812 AAAAACTCGAAGCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGA 4753 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||| | | || |||| ||| || ||||||||| || ||||| ||||||||||| Sbjct 4752 ACCTTTTGCTCGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAAT 4693 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 |||| | | | ||||| |||| |||| ||| ||| ||| |||||| Sbjct 4692 TGCAGTTTGTTTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAATAA 4633 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 ||| || |||||||| | | | ||| | | ||| || | ||| || | ||||| Sbjct 4632 AAAGCAGCTTGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATG 4573 Query 26353 AGTATAATATCCTT 26366 || |||| |||| Sbjct 4572 TGTGAAATACCCTT 4559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252783525377375