Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq24420 125 8e-24 seq24145 111 2e-19 >seq24420 Length=42041 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 ||||||||||| ||| | | | |||||||| ||||| || ||||||| | | |||| Sbjct 34044 AATTCTTCTTGATATCTCTCGAATTCCATCTGGTCCATGGTAAACTGCATACATTGCAGA 33985 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 |||||||| | || ||||| | ||||| || ||||||||||| || ||||||||||| Sbjct 33984 AATATTTGCCAAAAGAGCTTGAGAGGTGCATATATTACTGGTTGCCTTATCTCTTCTAAT 33925 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATC 139386 ||| || || || ||||| |||||||||| Sbjct 33924 ATGTTGTTCCCTGGTTTGAAGTGCTAATC 33896 Score = 107 bits (118), Expect = 2e-18 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 138201 CCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACA 138260 |||||||| ||||| |||||||||||||| || || ||||| | ||| | |||| | || Sbjct 35281 CCAGGACCGCCACCGCCATGTGGAATACAAAAAGTTTTATGAAGATTCAAATGAGAAACG 35222 Query 138261 TCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCG 138320 || | || || || | || ||||| ||||| || || | ||| |||||||| Sbjct 35221 TCAGAGCCGTAATCTCCCGGACGACAAAGACCAACCTGGGCGTTCATATTAGCACCATCT 35162 Query 138321 AGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGATGTTT--GTTT 138378 | ||| || || || ||||| |||||||| | | ||| |||| | ||| || | | Sbjct 35161 AAATACACTTGGCCTCCATTATCATGAACAAGTTGACAAATCT--CAGATATTGTAGCAT 35104 Query 138379 CAAATACACCATGAGTCGATGGATATGTAATCATAATACATG--AGAGT 138425 |||| || || | || || ||||| || | ||||||||||| ||||| Sbjct 35103 CAAAAACTCCGTTGGTGGACGGATAAGTGACCATAATACATGCTAGAGT 35055 >seq24145 Length=9760 Score = 111 bits (122), Expect = 2e-19 Identities = 425/656 (65%), Gaps = 20/656 (3%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||||||||| || || | ||||| || || || ||||| || || ||||| || ||||| Sbjct 878 TACACCAATCGGGCCCATACCAGGGCCGCCGCCACCATGAGGGATGCAGAAGGTTTTATG 937 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | ||||| || | ||| || | ||| ||| | ||| ||| ||| || ||| ||| Sbjct 938 AAGGTTTAGGTGGCTTACGTCGCCGCCAATGTCTCCAGGTCTTGATAGGCCAACCATTGC 997 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | || || || || | ||| || || || |||| |||| || | || | Sbjct 998 ATTCATGTTAGCGCCGTCAATATAGACTTGGCCGCCATGTGCATGTGTAATATCGCAAAC 1057 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG- 138420 || | | | |||||||| |||||||| ||||| ||||||||||||||| | | Sbjct 1058 CTCTTGCACAGTGGTTTCAAACACACCATGGGTCGACGGATATGTAATCATACAGCCCGC 1117 Query 138421 ---AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 | ||| ||| | ||| | |||| || | || || | | ||| || |||| Sbjct 1118 TAAATCTTTCGAATAT-TTCTCG--GCCTTTGTTTTGAAG-TCCTCAACGTCAATATTGC 1173 Query 138478 CATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCAC--TAGCAGG 138535 | || |||| | ||| ||||||||| ||| |||| |||| | || || Sbjct 1174 CTTCTGCATCTGCGATAACAGGAACAACTTTCCAGCCTACCAT--CTGCGCGGACGCGGG 1231 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCC 138595 || |||||||||||||| ||| || || || | ||| | | | | || || || Sbjct 1232 GTTGGTTCCATGTGCTGAGGTTGGAATGAGGCAGATATTACGGTGACCCTCACC--ATTT 1289 Query 138596 TTGATGATATGCTT--GGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTA 138653 |||| || || | || | || || || ||||| ||||| || | |||| || Sbjct 1290 GCGATGTGATAATTACGAATGGTCAAAAGCCCAGCATATTCACCTTGCGCGCCTGAATTT 1349 Query 138654 GGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATCT 138713 |||||| || | ||| ||||||||||||| || | | ||| | | ||||| Sbjct 1350 GGTTGTTGGCTAATCGCATCGTAACCTGTGATATCGCAAAGCTTTTTATTGAGATCATCG 1409 Query 138714 ATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATG--TGGATGCACGTTGGCAA 138771 || || | | || || || || ||| || | | | | || |||| ||| ||| Sbjct 1410 ATCATTTCAAGGTAGCCTGCGG-CTTGATC-TAAGGGAACGAACGGGTGCAAGTTCCCAA 1467 Query 138772 ATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAA 138827 |||| ||||| || || |||| || | | |||||| |||||||| |||||| Sbjct 1468 ATTCAGGCCATGTTACTGGGATCATCTCAACGGTTGCATTGAGTTTCATGGTGCAA 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578396494975800