Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq76374 100 7e-17 >seq76374 Length=18478 Score = 100 bits (110), Expect = 7e-17 Identities = 367/569 (64%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 11601 TGGCCCTTCGATCCCCTTACCCCCATGAAATATGGCGCGATCCTCGCGGATCCGCCCTGG 11660 |||||||| || |||||||| || |||| |||| |||||| | || ||||| || ||| Sbjct 13811 TGGCCCTTTGAACCCCTTACGCCGCTGAAGTATGATGCGATCTTAGCTGATCCACCGTGG 13752 Query 11661 GCTTATGTGATGCGCTCCGAGAAGGGGCACGCGAAGAGCCCCGAGGCGCATTACGACACG 11720 || ||||| | | ||||| | || ||| || ||||||| || || Sbjct 13751 CGCTACAAAATGCGAAGCAAAAAGGGTTATAAAAAATCCCCTGAATCGCATTATGAGACC 13692 Query 11721 ATGTCGGTGGCGGATCTGAGCGCGCTCCCCGTCGAGCAGCTGGCGGGCCCCGACTGCATG 11780 ||| | || ||| | | |||||||| || | | |||| ||||| || Sbjct 13691 ATGGATATCGCCGATATTAAAGCGCTCCCTGTGCAAGATTTGGCCTCAAAGAACTGCTTG 13632 Query 11781 CTATTCATGTGGTCGACCTGGCCGCATCTGAATGTCGCTCTGAAGCTGATGGCCGACTGG 11840 || || | ||||| || |||||||| |||| || | || ||||| || |||| Sbjct 13631 CTCTTTTTATGGTCAACATGGCCGCACCTGACACAGGCCTTAGAGGTGATGAACGCCTGG 13572 Query 11841 GGCTTCACCTACATTACCGGCGGATCCTGGACGAAGCGCACGAACAGGA-ACTGGAAGGT 11899 | |||| || ||||| ||||| | |||| || | |||| | || | || Sbjct 13571 GAGTTCAAGTATATTACGGGCGGCGCATGGATCAA----AAAAACAAAACACGGCAAAAA 13516 Query 11900 CTGCTTCGGCACGGGCTACGTGCTGCATTCCGCGACCGAGCCTTTCCTGGTCGGCAAACT 11959 | || || ||||| || ||||| || | |||||||| | || | || || | Sbjct 13515 CGCTTTTGGAACGGGTTATGTGCTTAGATCATCAACCGAGCCGTATTTGATTGGAAAGAT 13456 Query 11960 -GAACCGCCCGAAGAC-CGTGTCGCGCACCGAGCGCAACGTGATCGTCGCCGACGAGCAG 12017 | ||||| ||| | ||| | || |||||||||||||| | | ||| Sbjct 13455 AGGGTCGCCCAAAGTCACGTCTAAATCA--GAGCGCAACGTGATTGA--------AACAG 13406 Query 12018 ATTCCGGATTCGATCGAGGCGATCCGGCGCGAGCATTCCCGCAAACCCGACCAGATGCGC 12077 ||| | |||| || || | || |||||||| ||||||||||| | ||||| Sbjct 13405 ATTATAGCG-CGATTGAAGCTCGCTTTCGAGAGCATTCGCGCAAACCCGATGATATGCGA 13347 Query 12078 GAGATGATCGAGCGCCTCCTGCCGCACGCGTATTGCTGCGAGCTCTTCGCCCGCGAGCCA 12137 |||||| ||||| || ||||| ||| ||||| |||||| |||||||| ||| || Sbjct 13346 ATGATGATTGAGCGGCTTTTGCCGACCGCCCATTGCGCCGAGCTTTTCGCCCGTGAGTCA 13287 Query 12138 TGGTTCGGTCACGAGGTATGGGGCAACGA 12166 ||| || || || || |||||||| || Sbjct 13286 TGGCAAGGCCATGATGTGTGGGGCAATGA 13258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128490579267890