Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq20317 179 7e-40 seq66674 159 6e-34 seq42503 159 6e-34 seq17180 120 5e-22 seq12343 93.3 8e-14 >seq20317 Length=5186 Score = 179 bits (198), Expect = 7e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||||| ||| |||| ||| | || | ||| || ||| ||| Sbjct 208 ATTTGCATTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTA 267 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| || | ||| ||||||||||| || |||||||| |||||||| ||| Sbjct 268 TAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGA 327 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| |||||||| ||||| | || | |||| |||||| || ||| Sbjct 328 TCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAA 387 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| || ||||| || || || ||||| ||||| || |||||| Sbjct 388 GCTTCCACTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 >seq66674 Length=28361 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || | || | |||||| || | |||||| ||| |||||||| Sbjct 27418 ATACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCT 27477 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | ||| ||||||||||| || ||||| || || | || ||||| ||| Sbjct 27478 GATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 27537 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | |||| |||||||| |||| ||| Sbjct 27538 GGAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCA 27597 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || |||||||| || || ||||| || || || |||||| Sbjct 27598 ACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||||| | || | ||| | |||| || || ||| ||||| || Sbjct 27646 ATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCT 27705 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| ||| || |||||||| || ||||| ||||| | |||||||| || Sbjct 27706 GAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27765 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | |||| ||||||||| |||| || Sbjct 27766 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCG 27825 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || |||||||| || || ||||| ||||| ||||||||| Sbjct 27826 ACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||||| | ||| | ||| | || | || || ||||||| Sbjct 27868 ATTTGCATTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTA 27927 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||||| ||| || |||||||| || ||||| ||||| | |||||| Sbjct 27928 TAATCTGAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGA 27987 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| ||| | |||| ||| || || ||| Sbjct 27988 TCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAA 28047 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| || |||||||| |||| || || ||||| ||||||||| Sbjct 28048 GCTTCGACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| |||| || ||||| || | || | ||| || || ||| Sbjct 28096 ATTTGCATTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTA 28155 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||||| ||| ||||||||||| || ||||| || || | ||||| Sbjct 28156 TAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGG 28215 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| ||||| | || | |||| ||| || || ||| Sbjct 28216 TCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAA 28275 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| || || || ||||| || || || ||||| ||||| || |||||| Sbjct 28276 GCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 >seq42503 Length=950 Score = 159 bits (176), Expect = 6e-34 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| ||||| || | ||| ||||||||||| || |||||||| |||||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| |||||||| ||||| | || | ||| ||||||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||| ||||| ||||||||||| |||| || || ||||| || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 193359 AT 193360 || Sbjct 181 AT 182 Score = 138 bits (152), Expect = 2e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| | || || |||||||||| || || | || | || | ||| || || || Sbjct 174 AATYTGCATYCCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTT 233 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||||| ||| ||||||||||| || ||||| || || | ||||| Sbjct 234 ATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTG 293 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| |||||||| ||||| | || | ||| ||||||||| || Sbjct 294 GTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGA 353 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||||| |||| || || ||||| ||||||||| Sbjct 354 AGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq17180 Length=12851 Score = 120 bits (132), Expect = 5e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||||||| ||||| ||||| || || | || ||||| ||||| ||||| || || Sbjct 4087 ATCCTCTAATTGCTTTCCCGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTT 4028 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || |||||||| || | |||| |||||||| || | |||||| || || || || Sbjct 4027 ATCCTGGATTTTGGTCTTAACATTTTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAAT 3968 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || || || ||||| Sbjct 3967 AGTTTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 3932 >seq12343 Length=6788 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||| | | || |||| ||| | || | ||||| ||| || ||||| | Sbjct 2155 ACCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAA 2214 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC---AGG 193249 | || | | ||| |||||||||||||| |||| || || | || ||||| ||| Sbjct 2215 AAGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGG 2274 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||||||||| || ||||| | ||||| ||||| | |||| |||| | ||| Sbjct 2275 AGGTATTCCCTCCTTATCCTTGATTTTTGTTTTAACATTTTCGATAG--------GCCTC 2326 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || ||||||||||| | || || ||||| || || ||||| Sbjct 2327 AACCTCAAGGGTAATAGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898719153022800