Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq66674 163 4e-35 seq20317 159 5e-34 seq42503 152 8e-32 seq62093 120 4e-22 seq65606 102 1e-16 seq65604 102 1e-16 >seq66674 Length=28361 Score = 163 bits (180), Expect = 4e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | ||||| ||||| || || | |||||||||| ||| Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || ||| |||||| ||||| || ||||| || || ||||| || Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 27757 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || | |||||| ||||| | ||||||||||| Sbjct 27756 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAA 27697 Query 156002 TATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || |||| | | || ||||||||||| |||||||| ||||| || Sbjct 27696 CAT-TCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGG 27649 Score = 152 bits (168), Expect = 8e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||||||| | ||||| ||||| || || | ||||| |||| ||| Sbjct 27648 AATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTC 27589 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || || |||||| ||||| |||||||| || |||||||| || Sbjct 27588 TGATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 27529 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||| ||||| || | || ||| | ||||||||||| ||||| Sbjct 27528 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAA 27469 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||| | |||||||| |||||| | ||||| ||| Sbjct 27468 CATTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGAGGTGGT 27420 Score = 145 bits (160), Expect = 1e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || || || || ||||| || || | |||||||||| ||| Sbjct 28104 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 28045 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| || || |||||||| ||||| || || ||||| || Sbjct 28044 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 27985 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || | |||||| ||||| | ||||||||||| Sbjct 27984 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATAA 27925 Query 156002 TATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || |||| | | || ||||||||||| || ||||| ||||| || Sbjct 27924 TAT-TCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGG 27877 Score = 143 bits (158), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| ||||||||||||| || ||| | ||||| |||| ||| Sbjct 28332 AATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTC 28273 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || || |||||| |||||||| ||||| || || ||||| || Sbjct 28272 AGACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 28213 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | ||| ||||| || | || ||| ||||| | ||||||||||| Sbjct 28212 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAA 28153 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| ||| | || ||||| | || | ||||||||||| || Sbjct 28152 CAT--CCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGATTAAGAGGAGG 28105 >seq20317 Length=5186 Score = 159 bits (176), Expect = 5e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| | ||||||||||| || || | ||||| |||| ||| Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||| || || |||||| |||||||| ||||| || |||||||| || Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||||| ||| || || || | |||||| | ||||||||||| ||||| Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAA 265 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| |||| |||||||| || | ||||| ||||| || Sbjct 264 CAT-TCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGG 217 Score = 136 bits (150), Expect = 6e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || || || || ||||| || || | |||||||||| ||| Sbjct 216 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 157 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| || || |||||||| ||||| || || ||||| || Sbjct 156 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 97 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || | |||||| |||||| | ||||||||||| Sbjct 96 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAA 37 Query 156002 TATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAG 156037 ||| || |||| | | || ||||||||||| || || Sbjct 36 TAT-TCAAAAGGAATCCACTCTTCATTTAGTATTGAG 1 Score = 134 bits (148), Expect = 2e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| ||||||||||| || ||||| | || || ||| || Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| || || || |||||||| ||||| || || ||||| || Sbjct 612 AGATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 553 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| |||| | ||| || |||||| | |||||| | ||||| ||||| || || Sbjct 552 GCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAA 493 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| || | || ||||||||||| |||||||| ||||| || Sbjct 492 CAT--CCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGG 445 >seq42503 Length=950 Score = 152 bits (168), Expect = 8e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || || ||||| |||||||| || | |||||||||| ||| Sbjct 411 AATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTC 352 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || || || |||||| |||||||| ||||| || || ||||| || Sbjct 351 TGATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 292 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | ||| ||||| || | || ||| ||||| | |||||||||| Sbjct 291 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATA- 233 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| ||| | || ||||| ||||| | ||||| ||||| || Sbjct 232 -ACATCCAAAAGGAGTCCACCCTTCACTTAGTCCTCAGATTGAGAGGAGG 184 Score = 145 bits (160), Expect = 1e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || || || || ||||| || || | |||||||||| ||| Sbjct 867 AATGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 808 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| || || |||||||| ||||| || || ||||| || Sbjct 807 AGACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 748 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || | |||||| ||||| | ||||||||||| Sbjct 747 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATAA 688 Query 156002 TATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || |||| | | || ||||||||||| || ||||| ||||| || Sbjct 687 TAT-TCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGG 640 Score = 141 bits (156), Expect = 1e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| |||||||| || | |||||||||| |||| Sbjct 182 ATGCARATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCT 123 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || |||||| |||||||| ||||| || |||||||| || Sbjct 122 GATACTATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 63 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| ||||| || | |||||| | ||||||||||| ||||| Sbjct 62 CAGAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTTTATCAGACTATAAC 3 Query 156003 AT 156004 || Sbjct 2 AT 1 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || ||||||| | ||||||||||| || ||| | ||||| |||| || Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || || |||||| |||||||| ||||| || |||||||| || Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||| || ||||| | |||||| |||||| | || ||||| || Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || ||| | || ||||| || || | ||||| ||||| || Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 412 >seq62093 Length=56387 Score = 120 bits (132), Expect = 4e-22 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 155814 TGTAAT--AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAG 155871 |||||| || |||||||| || | ||||| ||||| || || || ||||| | || | Sbjct 3728 TGTAATCCAAGATGCAAATCTTCGTCAAAACTTTGACGGGCAAGACCATTACCCTTGAGG 3669 Query 155872 TCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATAC 155931 ||||| ||| |||| || ||| ||||| | ||| || || ||||| ||||| || | Sbjct 3668 TCGAACCTTCAGATACCATCGAAAATGTGAAGACTAAGATCCAGGATAAGGAAGGAATTC 3609 Query 155932 CTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTAT 155991 ||||||| || ||| | | || | ||| || ||||||||||||||| || ||||| | Sbjct 3608 CTCCAGATCAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGAAGGACTTTGT 3549 Query 155992 CAGATTATAATAT 156004 | |||||||| || Sbjct 3548 CTGATTATAACAT 3536 >seq65606 Length=3149 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| ||| | ||||| ||||| || || || || | | || | |||| ||| Sbjct 2504 ATGGAAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCA 2445 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| ||||||| ||| | |||||||| ||||| || |||||||| || Sbjct 2444 GATACCATCGAAAATGTGAAAACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATCAG 2385 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || | ||| || ||||||| |||||| || ||||| || ||||||||| Sbjct 2384 CAATGTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATAAT 2325 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || | ||| || | ||||| | || | |||| ||||| |||| Sbjct 2324 ATTTAGAAACAGTCTGGTCTTCACATCGTCCTTCGATTCAGAGGGGGTG 2276 >seq65604 Length=3149 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| ||| | ||||| ||||| || || || || | | || | |||| ||| Sbjct 646 ATGGAAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCA 705 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| ||||||| ||| | |||||||| ||||| || |||||||| || Sbjct 706 GATACCATCGAAAATGTGAAAACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATCAG 765 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || | ||| || ||||||| |||||| || ||||| || ||||||||| Sbjct 766 CAATGTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATAAT 825 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || | ||| || | ||||| | || | |||| ||||| |||| Sbjct 826 ATTTAGAAACAGTCTGGTCTTCACATCGTCCTTCGATTCAGAGGGGGTG 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731111173314000