Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq66674 192 1e-43 seq42503 165 2e-35 seq20317 163 6e-35 seq62093 104 5e-17 seq65606 86.0 1e-11 seq65604 86.0 1e-11 >seq66674 Length=28361 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||| | ||| |||||||| || || | |||||| || ||||| || Sbjct 27418 ATACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCT 27477 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| |||| || |||||||||||||||||||| || | || ||||| || Sbjct 27478 GATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 27537 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| || ||||| ||||| ||| || | ||| Sbjct 27538 GGAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCA 27597 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || ||||||||||| | |||||||| || ||||||||| Sbjct 27598 ACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 172 bits (190), Expect = 1e-37 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | | ||| |||||||| | ||||| || ||| || || |||||||| Sbjct 27646 ATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGA-ATGTTATAATC 27704 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| |||||||||||||||||||||||||| | |||||||| || Sbjct 27705 TGAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGG 27764 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 27765 GGGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTC 27824 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || ||||||||||| | ||||| | ||| || |||||| Sbjct 27825 GACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 168 bits (186), Expect = 1e-36 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 || |||||||| | | ||||||||||| | ||| | | |||| || ||||||||||| Sbjct 27874 ATTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATC 27932 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| |||||||||||||||||||||||||| | |||||||| || Sbjct 27933 TGAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGG 27992 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| || || ||| ||||| || | ||||| | ||| Sbjct 27993 GGGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTC 28052 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || |||||||| ||||| || |||| ||| || |||||| Sbjct 28053 GACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 152 bits (168), Expect = 1e-31 Identities = 177/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||||||| | ||||| | ||| || || || || || | |||| ||||| || | Sbjct 27184 GTTTAAT--TTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGT 27241 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 ||||||| ||||| || ||| |||| ||||||||||||||||||||||| || | || | Sbjct 27242 TATAATCGGATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCT 27301 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || || || || ||||| ||||| ||| ||||| || | ||| | Sbjct 27302 GATCTGGAGGAATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAG 27361 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || ||||| ||||| || ||||||||||| | |||||||| || |||||||| Sbjct 27362 AGGGCTCAACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 143 bits (158), Expect = 5e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| || | ||||| | |||| || |||||||||||||||||||| || | Sbjct 28149 GATGTTATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACG 28208 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || || || || ||||| |||||||| |||||| || ||||| || | Sbjct 28209 TTGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGT 28268 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| ||||| || || |||||||| ||||| | ||||||| ||| ||||| Sbjct 28269 GTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTG 28328 Query 192534 CATT 192537 |||| Sbjct 28329 CATT 28332 >seq42503 Length=950 Score = 165 bits (182), Expect = 2e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 || || ||||| | | ||||||||||| | ||| | | |||| || ||||||||||| Sbjct 637 ATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATC 695 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||| | |||| |||||||||||||||||||||||||| | |||||||| || Sbjct 696 TGAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGG 755 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| || || ||| ||||| || | ||||| | ||| Sbjct 756 GGGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTC 815 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || |||||||| ||||| || |||| ||| || |||||| Sbjct 816 GACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 159 bits (176), Expect = 7e-34 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| || ||||| || ||| |||| || ||||||||||||||||| || |||||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || |||||||| |||||||| |||||| || ||||| |||| | Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||| ||||| || |||||||||||||| || || | ||| || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 192535 AT 192536 || Sbjct 181 AT 182 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 ||||| || | || | ||| || ||| |||||||| || | ||||| | |||| || Sbjct 202 ACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTTCTTCCATCCTCT 261 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 |||||||||||||||||||| || | ||||| || || || || ||||| |||||||| Sbjct 262 AATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGA 321 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 |||||| || ||||| |||| ||| || | ||| ||||| ||||| || |||||| Sbjct 322 ATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATAGTTTTA 381 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||| || || | ||| || |||||| Sbjct 382 CCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq20317 Length=5186 Score = 163 bits (180), Expect = 6e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 ||||||||||| | ||| | | |||| || ||||||||||| || | |||| | |||| Sbjct 4 AATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 |||||||||||||||||||||||||| | |||||||| || || || ||||| ||||| Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| || || ||| ||||| || | ||||| | ||| ||||| ||||| || || Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||| ||||| || |||| ||| || |||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 216 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | | |||||||||||| | || | || || ||| || || || Sbjct 442 ATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCT 501 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| |||| ||||| || || ||||||||||| | |||||| ||||| || Sbjct 502 GACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGG 561 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || || || || | |||||| | ||| Sbjct 562 GGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCA 621 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || |||||||| || ||||| || ||||| | ||| ||||||||| Sbjct 622 ACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 Score = 120 bits (132), Expect = 6e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 ||||| || | ||| | || ||| || || || || || || ||||| ||| |||| || Sbjct 691 ACTAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCGGACAATGTACGTCCATCCTC 749 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 |||||| || ||||||||||| || | || ||||| || || |||||||| ||||| || Sbjct 750 CAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCCTG 809 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || | || ||||| || | ||||| | ||| ||||| || || |||||||| Sbjct 810 GATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTT 869 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || | ||||| | ||| || ||||| Sbjct 870 ACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq62093 Length=56387 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||||||||| || || | | |||| || | || || ||||||||||| | | Sbjct 3536 ATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGT 3595 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || |||||||| ||||| || || ||| | || ||||| || | | Sbjct 3596 TGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTTCGATGGTA 3655 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| || || || |||||||| || || || || ||||| | || || ||| Sbjct 3656 TCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGAAGATTTGC 3715 Query 192535 ATTTT 192539 || || Sbjct 3716 ATCTT 3720 >seq65606 Length=3149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 192342 AGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGC 192401 || || ||| | ||||||||||| || || || | | |||| || | || | ||||| Sbjct 2310 AGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCTTCAAGCTGCTGGCCAGC 2369 Query 192402 AAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461 |||||| | || ||||| || || |||||||| |||||||| | ||| |||| || Sbjct 2370 AAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGAGCTTAGTTTTCAC 2429 Query 192462 ATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||| || | |||||| | ||| | || || | ||||| || || || || ||||| Sbjct 2430 ATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTCTTGCCCGTCAAAGTTTT 2489 Query 192522 AATAAATATCTGCAT 192536 | ||| || | ||| Sbjct 2490 GACAAAGATTTCCAT 2504 >seq65604 Length=3149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 192342 AGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGC 192401 || || ||| | ||||||||||| || || || | | |||| || | || | ||||| Sbjct 840 AGACTGTTTCTAAATATTATAATCGGACAAAGTCCTTCCATCTTCAAGCTGCTGGCCAGC 781 Query 192402 AAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461 |||||| | || ||||| || || |||||||| |||||||| | ||| |||| || Sbjct 780 AAAGATGCGACATTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGAGCTTAGTTTTCAC 721 Query 192462 ATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||| || | |||||| | ||| | || || | ||||| || || || || ||||| Sbjct 720 ATTTTCGATGGTATCTGAAGGTTCGGCCTCAAGGGAGATGGTCTTGCCCGTCAAAGTTTT 661 Query 192522 AATAAATATCTGCAT 192536 | ||| || | ||| Sbjct 660 GACAAAGATTTCCAT 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983430985797750