Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq66674 201 2e-46 seq20317 161 2e-34 seq42503 159 6e-34 seq27661 111 3e-19 seq17180 86.0 1e-11 >seq66674 Length=28361 Score = 201 bits (222), Expect = 2e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||||| ||| |||||||| || || | |||||| ||| ||||| ||| Sbjct 27418 ATACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCT 27477 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| ||| | || || ||||||||||||||||| || || | || || || || Sbjct 27478 GATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGA 27537 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| || ||||| ||||||||| || | ||| Sbjct 27538 GGAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCA 27597 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||||||||| | |||||||| ||| ||||||||| Sbjct 27598 ACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || ||| |||||||| | ||||| || || ||| ||||||||| Sbjct 27646 ATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCT 27705 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || |||||||||||||||||||| ||||| | ||||| || || Sbjct 27706 GAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27765 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 27766 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCG 27825 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||||||||| | ||||| | || || |||||| Sbjct 27826 ACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || ||||||||||| | ||| | || || ||||||||||||| Sbjct 27874 ATTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCT 27933 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || |||||||||||||||||||| ||||| | ||||| || || Sbjct 27934 GAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27993 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||| ||||| || || ||||| | ||| Sbjct 27994 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 28053 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || |||||||| ||||| || |||| || || |||||| Sbjct 28054 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || || || || || | |||| ||||| ||| |||||||| ||| Sbjct 27193 CCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 27252 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| | || |||||||||||||||||||| || || | || || || || || Sbjct 27253 AAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27312 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || ||||| ||||| ||| ||||| || ||||| || | || ||| Sbjct 27313 ATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACT 27372 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||||||||| | |||||||| ||| |||||||| Sbjct 27373 TCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||| | | || | | || || ||||||||||||||||| || || | Sbjct 28150 ATGTTATAATCTGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGT 28209 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| |||||||| |||||| || ||||| || || Sbjct 28210 TGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTG 28269 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| || || |||||||| ||||| | ||||||| || |||||| Sbjct 28270 TCTGAAGCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGC 28329 Query 172068 ATT 172070 ||| Sbjct 28330 ATT 28332 >seq20317 Length=5186 Score = 161 bits (178), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | || ||||| | || | ||| || ||| ||||| ||| Sbjct 214 ATTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCT 273 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| ||| | || || |||||||| ||||||||||| |||||||| || || || Sbjct 274 GATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGA 333 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| || ||||| ||||| ||||| | ||| Sbjct 334 GGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCC 393 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||| ||||| | ||||||| || ||||||||| Sbjct 394 ACTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 ||||||||||| | ||| | || || ||||||||||||||| | || || | | || Sbjct 4 AATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCT 63 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||||||||||||||||||| ||||| | ||||| || || || || ||||| |||||| Sbjct 64 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCT 123 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || || || ||| ||||| || || ||||| | ||| ||||| ||||| || ||| Sbjct 124 TGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTT 183 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || |||| || || |||||| Sbjct 184 TTACCGGTTAAGGTCTTAACAAAGATTTGCATT 216 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || |||||||||||| | || | || || || || || ||| Sbjct 442 ATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCT 501 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || ||||| || || |||||||| || | |||||| || || || Sbjct 502 GACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGG 561 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || || || || || |||||||| | ||| Sbjct 562 GGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCA 621 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || |||||||| || ||||| || ||||| | || ||||||||| Sbjct 622 ACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 ||||| || | ||| | || || ||| || || || || || | ||| | || ||| Sbjct 691 ACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGTCCATCCTCC 750 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || |||||||| || || | || || || || || |||||||| ||||| || Sbjct 751 AATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGG 810 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || | || ||||| || || ||||| | ||| ||||| || || ||||||||| Sbjct 811 ATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACTTCAAGTGTGATGGTTTTA 870 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| | || || ||||| Sbjct 871 CCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq42503 Length=950 Score = 159 bits (176), Expect = 6e-34 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| |||||||||| ||| | || || |||||||||||||||||||| |||||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || |||||||| |||||||| |||||| || ||||| |||||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||| ||||| || |||||||||||||| || || | || || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 172068 AT 172069 || Sbjct 181 AT 182 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || ||||||||||| | ||| | || || ||||||||||||| Sbjct 637 ATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCT 696 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || |||||||||||||||||||| ||||| | ||||| || || Sbjct 697 GAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 756 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||| ||||| || || ||||| | ||| Sbjct 757 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 816 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || |||||||| ||||| || |||| || || |||||| Sbjct 817 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||||| || | || | ||| || || ||||||||| Sbjct 181 ATYCCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCT 240 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || ||||||||||||||||| || || | |||||||| || Sbjct 241 GAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGG 300 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| |||||||| || | ||| Sbjct 301 GGAATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCG 360 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || |||||||||||||| || || | || || |||||| Sbjct 361 ACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq27661 Length=34041 Score = 111 bits (122), Expect = 3e-19 Identities = 295/446 (66%), Gaps = 5/446 (1%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| ||||| ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 22431 TTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTT 22372 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | |||||||||||| ||||| | || ||| ||||| | || || || || Sbjct 22371 TCCATAAAATCAAAGGGATTCTCAGTTAGGTAA-ATTTTCGGACAATTAAGCTCTACAAG 22313 Query 38952 AA-TCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 || |||||| || ||||||| || |||||| | ||| | ||||| ||||| ||||| | Sbjct 22312 AAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGTTCATTCCCAACAT 22253 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || || | ||| ||| | |||||| |||| || | ||||| | ||| || Sbjct 22252 TCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTCACGAATAAT 22193 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | ||| | ||| |||| || || || | | | | ||| || Sbjct 22192 TTCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTG--TC-TAAACATAAGACAGGC 22136 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 |||||| ||||| || || ||||| |||||||||| ||| || ||| || | || || Sbjct 22135 AAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGGTGAGACCGGG 22076 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| | ||| | || || | ||| ||||| || ||||| | |||||||| || || Sbjct 22075 CATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAAGATGCC 22016 Query 39251 CTCCACACACGCAAATGCTATTATTC 39276 ||| || ||||| || || |||| Sbjct 22015 CTCGACGGCAGCAAAGGCAATAATTC 21990 >seq17180 Length=12851 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || ||||| || || ||||| || || | || || || || || ||||| || ||| Sbjct 4086 TCCTCTAATTGCTTTCCCGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTA 4027 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| | || ||||| ||||||||||| | || || || || ||||| Sbjct 4026 TCCTGGATTTTGGTCTTAACATTTTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATA 3967 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || | || || | ||| |||||||| Sbjct 3966 GTTTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904195054557000