Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq32514 111 5e-19 seq37281 100 8e-16 seq40607 89.7 2e-12 >seq32514 Length=37007 Score = 111 bits (122), Expect = 5e-19 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 ||||| | || ||||| ||||||| ||| || | |||||| |||||||| |||||| Sbjct 27099 TCATAGCAAACCATAACAGATTCCATAGCCTTAATAAGACGACGTTGAATATACCCAGTT 27040 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 || || |||||||| |||||||| | ||| | | |||||||||||| || ||| | Sbjct 27039 TCAGCAGTCTTTACAGCAGTATCAATCAAACCCTCTCTACCACCCATAGCGTGAAAGTAA 26980 Query 302674 AGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC 302733 | ||| || || ||| | | | | || | || || || || | || ||| || Sbjct 26979 AACTCAGATGGAGTTAACCCGGCTAAATAAGAATTTTCCACAAAGCCTCTCGACTCAGGA 26920 Query 302734 GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGC 302793 || ||| ||| |||| || || ||||| || || | || | || ||||| Sbjct 26919 CCATAATCGTCCTTAATAAAATGGGGAAGGGTTCTTTTAATGAAACCAAAAGGAATACGT 26860 Query 302794 TTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG 302853 || || ||||||||||| || || | || | ||| | ||| |||| ||| | ||| Sbjct 26859 TTACCCTCAACGTTCTGTTGCCCAACACAAGCAATAACCTGTGAAACATTAATATCTGAT 26800 Query 302854 CCCTTGGAGCCAGC 302867 ||||| || ||||| Sbjct 26799 CCCTTAGATCCAGC 26786 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || || ||||||||| | ||||| || || || | ||||||||||| Sbjct 27853 AATTTCTTTAAGTCGAGGAACACCAAGAGTTACATTT---TTAGATGACACACCAGCAAA 27797 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 || || || ||||| || | |||||| | ||||||||||| ||| || || || Sbjct 27796 ATGAAAGGTGTTCAGGGTCATTTGAGTTGCAGGCTCACCAATGGATTGAGCAGCCATGGC 27737 Query 301935 ACCAACCATTTCTCCTGG 301952 ||||||||||||||| || Sbjct 27736 ACCAACCATTTCTCCAGG 27719 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 304029 TAAGTTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAG 304088 ||||||||| || ||||||||||||| || ||| ||||| || ||||| ||||| | Sbjct 25534 TAAGTTGGGATCTGGTGTAATTACAGTACGTGCAGAGAAATCTACTCGCTTCCCCATCAA 25475 Query 304089 ATTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCG 304148 ||||| | || |||||| |||| || || |||| | |||| | || || || || || Sbjct 25474 GTTACCTCGAATACGACCCTCCTTGCCCTTGAGCCGAGCCTTAACAGCTTTGAGTGGACG 25415 Query 304149 ACCCGA 304154 |||||| Sbjct 25414 ACCCGA 25409 >seq37281 Length=46935 Score = 100 bits (110), Expect = 8e-16 Identities = 219/328 (67%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 289024 TTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| ||||||| || |||||||| ||||| || | | ||| ||||| || | | || Sbjct 20564 TTTCTACCAACCGCGTCAATTTCATCAATAAATAGAATACAAGGAGAGTTCTTACGAGCC 20623 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || |||| | || || | ||| | | |||| || ||| ||||||||| ||| || Sbjct 20624 ATGTCAAACATGTCCCTCATACGTGCAGGACCAACGCCTACAAACATTTCTAAAAACTCT 20683 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || | || || || || | || || || || || ||| ||| | || | | Sbjct 20684 GAGCCAGAAACAGATATAAAAGGAACGTTAGCCTCCCCAGCTGTGGCCTTAGCAATTAAA 20743 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || ||||||||||| || || | || | | | |||||||| | ||| || ||| Sbjct 20744 GTTTTCCCTGTTCCAGGAGGACCATTTAGAATAGCACCCTTTGGAATTTTAGCACCAAGT 20803 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | ||||| || ||| | |||||||| | |||| ||| || |||| ||||| Sbjct 20804 TCCAAATATTGCTGTGGGTTTTTTAAAAAATTAACAAACTCCATAATTTCAATCTTTGCT 20863 Query 289324 TCATCACATCCTGCTACATCAGCAAAAG 289351 || ||||| || |||||||| ||||| Sbjct 20864 TCTTCACAGCCAGCTACATCCTTAAAAG 20891 >seq40607 Length=4250 Score = 89.7 bits (98), Expect = 2e-12 Identities = 215/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||| |||||||||||||| ||||| ||||| |||| || | | ||| ||| Sbjct 3070 CCGACAGAGTCAATTTCGTCAATAAAAATGACACAAGGAGCCTTGGCTTTTGCAGCAGCA 3011 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| ||||| ||||| | ||||| | || |||| || || | Sbjct 3010 AAAAGCTCTCTGACACGTTTAGCTCCTTGTCCAACTAGAACCTCGTCAAACTCGGATCCA 2951 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || |||| |||| || | || || || || || || || || || | || || Sbjct 2950 GACGAATGAAAAAATGGAACTGTAGCCTCACCAGCGACAGCTCTTGCTAGCAAAGTTTTT 2891 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT 289268 || |||||||| ||||| | | | | ||||| || | |||| | |||| || Sbjct 2890 CCAGTTCCAGGAGGTCCAACAAGCAAACAACCCTTGGGGAGTTTTCCACCCA--AGTTGG 2833 Query 289269 A-TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || |||||||| | || ||||| || |||||||| | | ||| | ||| || |||| Sbjct 2832 AGTACTTCTCAGGATTTTTCAAAAAATCCACAATTTCTTGCAATTCTTCTTTGGCTTCAT 2773 Query 289328 CACATCCTGCTACATCAGCAAA 289349 |||||||| ||||| |||| Sbjct 2772 CACATCCTTTAACATCGTCAAA 2751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470249302456605