Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq76374 100 7e-17 >seq76374 Length=18478 Score = 100 bits (110), Expect = 7e-17 Identities = 401/623 (64%), Gaps = 19/623 (3%) Strand=Plus/Minus Query 14039 GATAGAGGCGATCAAAGCAGAACTGACGGAA--AATCCCCGCCTTGCCAACGATTTTCCC 14096 ||| ||||| || ||||| || || || | || || |||||||| | || ||||| Sbjct 9456 GATTGAGGCCATTAAAGCGGAGCT--CGAATTTAACCCACGCCTTGCTTATGACTTTCCT 9399 Query 14097 GAGGTTGCTGGTCAGGGACGTGTCTGGCGTGAAGGCGAGATCGTCACCAAGAACAATATC 14156 ||| || || || |||||||||||||| || | ||||| || || | |||| Sbjct 9398 GAGCTTTGCGGCGCTGGCCGTGTCTGGCGTGAGGGTGTTATCGTTACAAAACGCGATATT 9339 Query 14157 CGCGTCGAAGGGCTTGGCGCGAACCAGAAACTGCGCGGCCGTCGCCATGGTCCATATCGT 14216 | ||||| ||||| | | | ||| |||| || || || ||||| || ||||| Sbjct 9338 AAAATTGAAGGCTTTGGCACAGGCAAAAAAGTGCGTGGTCGCCGTCATGGCCCTTATCGC 9279 Query 14217 CCGGACCTGATGTTCTTTGACGATCTGGAGAATGACGAGGCCGTGCGGTCGCCCGAG-CA 14275 || ||||| || ||||||| ||| | || ||||| || || | |||| | || Sbjct 9278 CCTGACCTCATTATCTTTGATGATATTGAAAATGATGAAAATGT-TGAAAGCCCTCGCCA 9220 Query 14276 GCGCAAGAAGCTCGAAACTTGGATCAAGCGCGCCGCCTTGAAGGTCGGCCCGCCTGACGG 14335 ||| | ||||| | | ||| |||| ||||| ||||| | || || | || || Sbjct 9219 GCGTGACAAGCTTTATTCATGGGTCAACAAGGCCGCTATGAAGCTTGGGCCCACCGATGG 9160 Query 14336 CTCCATGGACGTGGTCTGGGTCGGGACCGTCCTTCATTATGACGCCGTGCTTGTTCGTGC 14395 ||| || || | | | | || || || || | |||| ||| || ||| || || Sbjct 9159 CTCTATTGATGCGCTTTATGTGGGCACTGTTTTGCATTTTGATGCGGTGATTAAGCGCAT 9100 Query 14396 CGCGAAATCGCCGGTCTGGCGTGTTGCCGAGTT-TCAGGCGGTCATTCAGTTTCCCGACC 14454 || ||| ||| | ||| || | | || ||| ||| | | ||||||||||| | Sbjct 9099 GGCCAAAAAGCCTGGTTGG-AACTTTCGAACTTATCAAGCGCTTTTACAGTTTCCCGATC 9041 Query 14455 GGATGGACCTTTGGGACCAGTTCGAAGAGGTCTACCAGAATGACGGTGAGGACGCCGCCC 14514 | ||||| | ||||| || | |||||| | || ||||| ||| |||| Sbjct 9040 GCATGGATTTATGGGATCAATGGGAAGAGCTTTATATCAATGA---TGA----TCCGCTT 8988 Query 14515 GCGCA----TTTTACGCCGAGCGCAAGGCGGATATGGACGCCGGTGCCATCGTCAACTGG 14570 ||| | |||||| | ||| | ||| |||||| ||||| || | || ||| Sbjct 8987 GCGGATAGGTTTTACCAGCAAAACAAAGAGGACATGGACCGTGGTGCGATTCTGAATTGG 8928 Query 14571 CCCGCGATCCAGCCTCTCATCTTCCTCATGCTGGAGCGGGCGTCCGACCATGACAGCTTC 14630 ||| | || ||| | | |||| | ||| ||||| ||| || ||||| ||||| Sbjct 8927 CCCTCCATGCAGTCCTTACTCTTTTTAATGAAAGAGCGTGCGGGGGATCATGAGAGCTTT 8868 Query 14631 GCGACCGAATATCAGAACAAGCC 14653 | | |||||| || ||||| || Sbjct 8867 GAAAGCGAATACCAAAACAATCC 8845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119369995518200