Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021792.1 Length=72961 Score E Sequences producing significant alignments: (Bits) Value seq36672 91.5 7e-14 seq22154 91.5 7e-14 seq22153 91.5 7e-14 >seq36672 Length=19642 Score = 91.5 bits (100), Expect = 7e-14 Identities = 188/271 (69%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 3143 ACCTACATGGGTGTCTAGTATTTTCCATCCTTTTTTAAAAAACTTTTGAGCAGT--CCAT 3200 ||||| ||| || ||||||||||| |||| |||| | ||| || | |||| Sbjct 1833 ACCTAAATGAGTATCTAGTATTTTATCACCTTCTTTAGCGTA--TTTCGTCAATAACCAT 1776 Query 3201 AAATACAATTTAACTGGTTTTTGAGTTTGATGTATTCGGATTTCATTTAATTTTTTATTT 3260 || || || ||||||||||||||| |||| || || ||||||| |||| ||||| Sbjct 1775 TCGTATAACTTTACTGGTTTTTGAGTTGGATGAATGCGTTTTTCATTCAATTGCTTATTA 1716 Query 3261 CCTTGCATTATATGTCCT--TCTTGTATTGATTTT--CCTTGCATCATACCTGACCACAT 3316 ||| |||| | | || | || | | ||||| ||||||||||| ||||||||||| Sbjct 1715 CCTCTCATTCGACTTTCTGAGCGTGAAAT-ATTTTCACCTTGCATCATTCCTGACCACAT 1657 Query 3317 ATATCTGAATAATCTTGTACTGCTAAATAGATT--AGTCCATGCAATTTCACAATCAGAA 3374 ||| |||| || || | || | | | | ||| | | | || || ||| || ||| Sbjct 1656 ATA-ATGAACAA-CTCGAACAGATTCAAACATTGAACTATAAGCTATCTCAGCGTCCGAA 1599 Query 3375 AAATCATTATCTCCATTACATTTATCCCAAA 3405 ||| || |||||||| ||||||||||| Sbjct 1598 AAACTGTTTTCTCCATTTACTTTATCCCAAA 1568 >seq22154 Length=8790 Score = 91.5 bits (100), Expect = 7e-14 Identities = 188/271 (69%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 3143 ACCTACATGGGTGTCTAGTATTTTCCATCCTTTTTTAAAAAACTTTTGAGCAGT--CCAT 3200 ||||| ||| || ||||||||||| |||| |||| | ||| || | |||| Sbjct 7559 ACCTAAATGAGTATCTAGTATTTTATCACCTTCTTTAGCGTA--TTTCGTCAATAACCAT 7502 Query 3201 AAATACAATTTAACTGGTTTTTGAGTTTGATGTATTCGGATTTCATTTAATTTTTTATTT 3260 || || || ||||||||||||||| |||| || || ||||||| |||| ||||| Sbjct 7501 TCGTATAACTTTACTGGTTTTTGAGTTGGATGAATGCGTTTTTCATTCAATTGCTTATTA 7442 Query 3261 CCTTGCATTATATGTCCT--TCTTGTATTGATTTT--CCTTGCATCATACCTGACCACAT 3316 ||| |||| | | || | || | | ||||| ||||||||||| ||||||||||| Sbjct 7441 CCTCTCATTCGACTTTCTGAGCGTGAAAT-ATTTTCACCTTGCATCATTCCTGACCACAT 7383 Query 3317 ATATCTGAATAATCTTGTACTGCTAAATAGATT--AGTCCATGCAATTTCACAATCAGAA 3374 ||| |||| || || | || | | | | ||| | | | || || ||| || ||| Sbjct 7382 ATA-ATGAACAA-CTCGAACAGATTCAAACATTGAACTATAAGCTATCTCAGCGTCCGAA 7325 Query 3375 AAATCATTATCTCCATTACATTTATCCCAAA 3405 ||| || |||||||| ||||||||||| Sbjct 7324 AAACTGTTTTCTCCATTTACTTTATCCCAAA 7294 >seq22153 Length=8843 Score = 91.5 bits (100), Expect = 7e-14 Identities = 188/271 (69%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 3143 ACCTACATGGGTGTCTAGTATTTTCCATCCTTTTTTAAAAAACTTTTGAGCAGT--CCAT 3200 ||||| ||| || ||||||||||| |||| |||| | ||| || | |||| Sbjct 7612 ACCTAAATGAGTATCTAGTATTTTATCACCTTCTTTAGCGTA--TTTCGTCAATAACCAT 7555 Query 3201 AAATACAATTTAACTGGTTTTTGAGTTTGATGTATTCGGATTTCATTTAATTTTTTATTT 3260 || || || ||||||||||||||| |||| || || ||||||| |||| ||||| Sbjct 7554 TCGTATAACTTTACTGGTTTTTGAGTTGGATGAATGCGTTTTTCATTCAATTGCTTATTA 7495 Query 3261 CCTTGCATTATATGTCCT--TCTTGTATTGATTTT--CCTTGCATCATACCTGACCACAT 3316 ||| |||| | | || | || | | ||||| ||||||||||| ||||||||||| Sbjct 7494 CCTCTCATTCGACTTTCTGAGCGTGAAAT-ATTTTCACCTTGCATCATTCCTGACCACAT 7436 Query 3317 ATATCTGAATAATCTTGTACTGCTAAATAGATT--AGTCCATGCAATTTCACAATCAGAA 3374 ||| |||| || || | || | | | | ||| | | | || || ||| || ||| Sbjct 7435 ATA-ATGAACAA-CTCGAACAGATTCAAACATTGAACTATAAGCTATCTCAGCGTCCGAA 7378 Query 3375 AAATCATTATCTCCATTACATTTATCCCAAA 3405 ||| || |||||||| ||||||||||| Sbjct 7377 AAACTGTTTTCTCCATTTACTTTATCCCAAA 7347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233113882232930