Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021799.1 Length=57447 Score E Sequences producing significant alignments: (Bits) Value seq36672 242 1e-59 seq34469 242 1e-59 seq34468 242 1e-59 >seq36672 Length=19642 Score = 242 bits (268), Expect = 1e-59 Identities = 488/722 (68%), Gaps = 4/722 (1%) Strand=Plus/Plus Query 39375 TAGAAAAAGAAATTATTGCTGTTGCTGGAGCTTCTATAAAAACATCTAGAGAAGTTGGAG 39434 |||||| ||||||| | ||||||||| | ||| |||||||| | | ||||||| Sbjct 16411 TAGAAAGTCAAATTATATCCGTTGCTGGATCGTCTGTAAAAACAGCAAACGAAGTTGCTT 16470 Query 39435 AGTTAGCAGAAAACTTAGCTACATTAGGTAAAAAAGGTCAAGATTTAATAAACCTTATTA 39494 | | || ||| ||||| || ||||| |||| | |||| || | || | Sbjct 16471 TGCTTGCGGAATCTTTAGCAACCTTAGGGAAAACAAAAGAAGAAATAGCTGATCTACTGG 16530 Query 39495 AGCCAGCTAATGATTTATCTATAGCATTACAAGCTACCAGTGCTGATGCCGCTGAATTTT 39554 |||||| |||||||| || || | |||| ||||| | || ||| | || ||||| | Sbjct 16531 AGCCAGTAAATGATTTGTCAATTGGATTAAAAGCTTCTTCTGAGGATACTGCGGAATTCT 16590 Query 39555 TAGTTCAAACATTAAACGCATTTGATG--AGCCATCAACAAGTGCTACTGAATTTGCAAA 39612 || |||||||| | |||||||||| | ||| | | ||| ||| ||| || | Sbjct 16591 TAATTCAAACAATTAACGCATTTGGAGGAAGCTCTAAGGAAG--CTAAGAAATACGCTGA 16648 Query 39613 TACAATCACAGCAATTAGAACATCTACCAGTTTAGACTTTGAGAAGATGCGTGATTCATT 39672 ||| || | | || ||||||||||| |||||||||||| |||||| ||| || Sbjct 16649 TACTATTGCTACGATAAGAACATCTACATCTTTAGACTTTGAAAAGATGAAAGATAGCTT 16708 Query 39673 CCAATACATAACACCTATATCTAAGATATTAAATAAGGATTTAGCTTATACGGGTGCTAT 39732 || || |||| || || || | |||||||||||||||||||||||||| ||| | | Sbjct 16709 TCAGTATTTAACTCCAATTTCCAGAATATTAAATAAGGATTTAGCTTATACCGGTTCGCT 16768 Query 39733 TGTTGGTTTATTAGCTGATAACGGATTAAAAGCGGAGAGTGCTGGTCGATTATTGGGTAC 39792 |||| || | ||||| |||||| | ||||| || || |||||||| || | || || Sbjct 16769 AATTGGGTTGCTTGCTGACAACGGAATTAAAGCCGAAAGAGCTGGTCGTTTGCTTGGGAC 16828 Query 39793 AGCATTACAAAAGATAGCTGCTGAGGGTAGAACTTTAGATGAAGTTTTAGGGGAAATAAA 39852 ||| || || ||||| || |||| || |||| || | |||| ||| | || Sbjct 16829 AGCTCAGCAGAAATTAGCTAAAGAAGGTAAGACATTAGTAGATGCATTAGATGAAGTGAA 16888 Query 39853 TGAAGCGCAAGAAAATGGCGTAAAAGGTTATGATTTACTTGCTTTAGCTTCTGATAGATT 39912 | || | |||||| || |||| ||| ||| | ||| | || | || ||| Sbjct 16889 TACTGCTTCTGCAAATGGAGTTAAAGAAATTGACTTATTGGCTATCGCCAGTAATTTATT 16948 Query 39913 CGGAAAACAAGCCGCTAAAATAGGTATTATACTGGCAGGAAACACTGATAAGGTAGAAAA 39972 ||||||||||| ||| | ||||||||||||| || ||| | ||| | || || | Sbjct 16949 TGGAAAACAAGCGGCTTCATTAGGTATTATACTAGCTTCAAATAGTGAGCAAGTGGATAT 17008 Query 39973 GAACGCACAAGCAATTAGAGATAATGGTTCTGCGATGAATAATTTAGTTAACCAACAGTT 40032 ||||| ||||||| | | || || || | || |||||||||| |||| | Sbjct 17009 TAACGCTGAAGCAATACGGAACAACGGAGGCGCATTAGATGATTTAGTTAATGAACAACT 17068 Query 40033 AGAATCTTTAGATGCTAAGATTGGTATATTGGATTCTACATGGGAACAATTTATTTTAAC 40092 |||| ||||||||| | || ||||| || | ||||||| ||| ||| |||| Sbjct 17069 TCAATCATTAGATGCTCATTTTAAAATATTAAATAGTCGATGGGAAGAATATATATTAAA 17128 Query 40093 TA 40094 || Sbjct 17129 TA 17130 >seq34469 Length=26544 Score = 242 bits (268), Expect = 1e-59 Identities = 488/722 (68%), Gaps = 4/722 (1%) Strand=Plus/Minus Query 39375 TAGAAAAAGAAATTATTGCTGTTGCTGGAGCTTCTATAAAAACATCTAGAGAAGTTGGAG 39434 |||||| ||||||| | ||||||||| | ||| |||||||| | | ||||||| Sbjct 13437 TAGAAAGTCAAATTATATCCGTTGCTGGATCGTCTGTAAAAACAGCAAACGAAGTTGCTT 13378 Query 39435 AGTTAGCAGAAAACTTAGCTACATTAGGTAAAAAAGGTCAAGATTTAATAAACCTTATTA 39494 | | || ||| ||||| || ||||| |||| | |||| || | || | Sbjct 13377 TGCTTGCGGAATCTTTAGCAACCTTAGGGAAAACAAAAGAAGAAATAGCTGATCTACTGG 13318 Query 39495 AGCCAGCTAATGATTTATCTATAGCATTACAAGCTACCAGTGCTGATGCCGCTGAATTTT 39554 |||||| |||||||| || || | |||| ||||| | || ||| | || ||||| | Sbjct 13317 AGCCAGTAAATGATTTGTCAATTGGATTAAAAGCTTCTTCTGAGGATACTGCGGAATTCT 13258 Query 39555 TAGTTCAAACATTAAACGCATTTGATG--AGCCATCAACAAGTGCTACTGAATTTGCAAA 39612 || |||||||| | |||||||||| | ||| | | ||| ||| ||| || | Sbjct 13257 TAATTCAAACAATTAACGCATTTGGAGGAAGCTCTAAGGAAG--CTAAGAAATACGCTGA 13200 Query 39613 TACAATCACAGCAATTAGAACATCTACCAGTTTAGACTTTGAGAAGATGCGTGATTCATT 39672 ||| || | | || ||||||||||| |||||||||||| |||||| ||| || Sbjct 13199 TACTATTGCTACGATAAGAACATCTACATCTTTAGACTTTGAAAAGATGAAAGATAGCTT 13140 Query 39673 CCAATACATAACACCTATATCTAAGATATTAAATAAGGATTTAGCTTATACGGGTGCTAT 39732 || || |||| || || || | |||||||||||||||||||||||||| ||| | | Sbjct 13139 TCAGTATTTAACTCCAATTTCCAGAATATTAAATAAGGATTTAGCTTATACCGGTTCGCT 13080 Query 39733 TGTTGGTTTATTAGCTGATAACGGATTAAAAGCGGAGAGTGCTGGTCGATTATTGGGTAC 39792 |||| || | ||||| |||||| | ||||| || || |||||||| || | || || Sbjct 13079 AATTGGGTTGCTTGCTGACAACGGAATTAAAGCCGAAAGAGCTGGTCGTTTGCTTGGGAC 13020 Query 39793 AGCATTACAAAAGATAGCTGCTGAGGGTAGAACTTTAGATGAAGTTTTAGGGGAAATAAA 39852 ||| || || ||||| || |||| || |||| || | |||| ||| | || Sbjct 13019 AGCTCAGCAGAAATTAGCTAAAGAAGGTAAGACATTAGTAGATGCATTAGATGAAGTGAA 12960 Query 39853 TGAAGCGCAAGAAAATGGCGTAAAAGGTTATGATTTACTTGCTTTAGCTTCTGATAGATT 39912 | || | |||||| || |||| ||| ||| | ||| | || | || ||| Sbjct 12959 TACTGCTTCTGCAAATGGAGTTAAAGAAATTGACTTATTGGCTATCGCCAGTAATTTATT 12900 Query 39913 CGGAAAACAAGCCGCTAAAATAGGTATTATACTGGCAGGAAACACTGATAAGGTAGAAAA 39972 ||||||||||| ||| | ||||||||||||| || ||| | ||| | || || | Sbjct 12899 TGGAAAACAAGCGGCTTCATTAGGTATTATACTAGCTTCAAATAGTGAGCAAGTGGATAT 12840 Query 39973 GAACGCACAAGCAATTAGAGATAATGGTTCTGCGATGAATAATTTAGTTAACCAACAGTT 40032 ||||| ||||||| | | || || || | || |||||||||| |||| | Sbjct 12839 TAACGCTGAAGCAATACGGAACAACGGAGGCGCATTAGATGATTTAGTTAATGAACAACT 12780 Query 40033 AGAATCTTTAGATGCTAAGATTGGTATATTGGATTCTACATGGGAACAATTTATTTTAAC 40092 |||| ||||||||| | || ||||| || | ||||||| ||| ||| |||| Sbjct 12779 TCAATCATTAGATGCTCATTTTAAAATATTAAATAGTCGATGGGAAGAATATATATTAAA 12720 Query 40093 TA 40094 || Sbjct 12719 TA 12718 >seq34468 Length=26499 Score = 242 bits (268), Expect = 1e-59 Identities = 488/722 (68%), Gaps = 4/722 (1%) Strand=Plus/Minus Query 39375 TAGAAAAAGAAATTATTGCTGTTGCTGGAGCTTCTATAAAAACATCTAGAGAAGTTGGAG 39434 |||||| ||||||| | ||||||||| | ||| |||||||| | | ||||||| Sbjct 13392 TAGAAAGTCAAATTATATCCGTTGCTGGATCGTCTGTAAAAACAGCAAACGAAGTTGCTT 13333 Query 39435 AGTTAGCAGAAAACTTAGCTACATTAGGTAAAAAAGGTCAAGATTTAATAAACCTTATTA 39494 | | || ||| ||||| || ||||| |||| | |||| || | || | Sbjct 13332 TGCTTGCGGAATCTTTAGCAACCTTAGGGAAAACAAAAGAAGAAATAGCTGATCTACTGG 13273 Query 39495 AGCCAGCTAATGATTTATCTATAGCATTACAAGCTACCAGTGCTGATGCCGCTGAATTTT 39554 |||||| |||||||| || || | |||| ||||| | || ||| | || ||||| | Sbjct 13272 AGCCAGTAAATGATTTGTCAATTGGATTAAAAGCTTCTTCTGAGGATACTGCGGAATTCT 13213 Query 39555 TAGTTCAAACATTAAACGCATTTGATG--AGCCATCAACAAGTGCTACTGAATTTGCAAA 39612 || |||||||| | |||||||||| | ||| | | ||| ||| ||| || | Sbjct 13212 TAATTCAAACAATTAACGCATTTGGAGGAAGCTCTAAGGAAG--CTAAGAAATACGCTGA 13155 Query 39613 TACAATCACAGCAATTAGAACATCTACCAGTTTAGACTTTGAGAAGATGCGTGATTCATT 39672 ||| || | | || ||||||||||| |||||||||||| |||||| ||| || Sbjct 13154 TACTATTGCTACGATAAGAACATCTACATCTTTAGACTTTGAAAAGATGAAAGATAGCTT 13095 Query 39673 CCAATACATAACACCTATATCTAAGATATTAAATAAGGATTTAGCTTATACGGGTGCTAT 39732 || || |||| || || || | |||||||||||||||||||||||||| ||| | | Sbjct 13094 TCAGTATTTAACTCCAATTTCCAGAATATTAAATAAGGATTTAGCTTATACCGGTTCGCT 13035 Query 39733 TGTTGGTTTATTAGCTGATAACGGATTAAAAGCGGAGAGTGCTGGTCGATTATTGGGTAC 39792 |||| || | ||||| |||||| | ||||| || || |||||||| || | || || Sbjct 13034 AATTGGGTTGCTTGCTGACAACGGAATTAAAGCCGAAAGAGCTGGTCGTTTGCTTGGGAC 12975 Query 39793 AGCATTACAAAAGATAGCTGCTGAGGGTAGAACTTTAGATGAAGTTTTAGGGGAAATAAA 39852 ||| || || ||||| || |||| || |||| || | |||| ||| | || Sbjct 12974 AGCTCAGCAGAAATTAGCTAAAGAAGGTAAGACATTAGTAGATGCATTAGATGAAGTGAA 12915 Query 39853 TGAAGCGCAAGAAAATGGCGTAAAAGGTTATGATTTACTTGCTTTAGCTTCTGATAGATT 39912 | || | |||||| || |||| ||| ||| | ||| | || | || ||| Sbjct 12914 TACTGCTTCTGCAAATGGAGTTAAAGAAATTGACTTATTGGCTATCGCCAGTAATTTATT 12855 Query 39913 CGGAAAACAAGCCGCTAAAATAGGTATTATACTGGCAGGAAACACTGATAAGGTAGAAAA 39972 ||||||||||| ||| | ||||||||||||| || ||| | ||| | || || | Sbjct 12854 TGGAAAACAAGCGGCTTCATTAGGTATTATACTAGCTTCAAATAGTGAGCAAGTGGATAT 12795 Query 39973 GAACGCACAAGCAATTAGAGATAATGGTTCTGCGATGAATAATTTAGTTAACCAACAGTT 40032 ||||| ||||||| | | || || || | || |||||||||| |||| | Sbjct 12794 TAACGCTGAAGCAATACGGAACAACGGAGGCGCATTAGATGATTTAGTTAATGAACAACT 12735 Query 40033 AGAATCTTTAGATGCTAAGATTGGTATATTGGATTCTACATGGGAACAATTTATTTTAAC 40092 |||| ||||||||| | || ||||| || | ||||||| ||| ||| |||| Sbjct 12734 TCAATCATTAGATGCTCATTTTAAAATATTAAATAGTCGATGGGAAGAATATATATTAAA 12675 Query 40093 TA 40094 || Sbjct 12674 TA 12673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183527372059570