Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021800.1 Length=34844 Score E Sequences producing significant alignments: (Bits) Value seq64242 84.2 5e-12 >seq64242 Length=2704 Score = 84.2 bits (92), Expect = 5e-12 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 8218 TATGAGAACAATAAAATACATCGTTTTGCATTGCACCGCAACGGTTCAGCACGCAAAAGT 8277 |||||||| || ||| |||||| ||||||| ||||| || ||| | | || || Sbjct 2107 TATGAGAAATATCCGATATATCGTTCTGCATTGTACCGCTACACCTCAAAATACTAAGGT 2048 Query 8278 AGAAAACA-TTATAAAATATTGGCGCAATGTCTTAAAATGGAAATCAAACGGTTATCATT 8336 || || || |||| || ||||| ||| |||||||||||| |||||||||| Sbjct 2047 -GAGTTCAATTGTAAATTACTGGCGTAATACGTTAAAATGGAAACATGTTGGTTATCATT 1989 Query 8337 TTATAATTGAGTCGTCGGGAAAAGTTCACAATATTACACCTATT-GAGAATGTTGCGAAC 8395 |||| ||| | | ||||| ||| ||| |||||| | || || || | || Sbjct 1988 TTATCATTAATATTTACGGAAATGTT-ACACAATTACAGCCCTTAGAAAAACCGACAAAT 1930 Query 8396 GGTGTCGCGGGTTATAACTCGGCGTCTATTCATATTAGTTATATCGGGGGAATTGATAAA 8455 ||||| ||| || || | | || || || |||||||||||||| ||||| |||||| Sbjct 1929 GGTGTTAAGGGGTACAATGCTGAATCGATACACATTAGTTATATCGGAGGAATAGATAAA 1870 Query 8456 AACGGAAAAGCA 8467 | || ||| || Sbjct 1869 CAAGGCAAACCA 1858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111269203642380