Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq46208 107 2e-18 >seq46208 Length=8390 Score = 107 bits (118), Expect = 2e-18 Identities = 336/509 (66%), Gaps = 21/509 (4%) Strand=Plus/Minus Query 172488 GAATTTTTAGATT-TATGCGGGTTTACTGAAAGAAAAGAAGGTGATTTAGGCCCAATTTA 172546 ||||||||||||| |||| || ||||| | ||| |||| || ||| | || ||| | || Sbjct 5975 GAATTTTTAGATTCTATG-GGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATA 5917 Query 172547 TGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGTG-ATACAGATTACACAG 172605 |||||| |||||| | ||| || || |||| | | | || | || || ||| || Sbjct 5916 TGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAA-TATGCACACTGACTACCAAG 5858 Query 172606 GACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTACAAAACAACCCAGAAAGTA 172665 | ||||||| ||||| | ||| ||| || ||| || || | |||||| | | Sbjct 5857 GGAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAAAGATAACCCAAACGATC 5798 Query 172666 GAAGGATGTTAATTGATAGTTGGAATGTACCTCAACTTGATAAA------ATGGTTCTTC 172719 | | || ||||| |||||| ||| || |||| |||| ||||| Sbjct 5797 GTCGTATATTAATGTGCGCCTGGAAT---CCTAAA---GATATTCCCCTGATGGCTCTTC 5744 Query 172720 CTCCTTGCCATACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCTTAGATTGTCAGT 172779 | ||||| || ||| || ||||||||||| | || | || || |||||| | Sbjct 5743 CCCCTTGTCACTGTTTGGCTCAATTTTATGT-TGCCAATGGTGAA--CTATCTTGTCAAT 5687 Query 172780 TATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTGGATTTTATTCAT 172839 |||||||| |||| || ||| | ||||| || ||||||| ||| || | | |||||| Sbjct 5686 TATATCAACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTC 5627 Query 172840 TTTTAATACTTGTGTTAAGTAAATG-GTGCAATTTAACTCCAGGAAAGTTTATTCATACT 172898 | |||| || |||| | ||| | |||| | | || || | || |||||||| Sbjct 5626 TCTTAACGATTATGTT-GGCCCATGTGACCAATCTCAAACCTGGTGAATTCATTCATACC 5568 Query 172899 TTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGA 172958 || || |||| ||||| || ||||| |||| | ||| | | |||||||| ||| Sbjct 5567 TTAGGTGATGCACACGTATACAACAATCACATTGATGCCTTAGAAGAACAATTAAAGAGA 5508 Query 172959 AAACCATATACTTTTCCAAATGTTAAATT 172987 | ||| | | || || | | | ||||| Sbjct 5507 GAGCCACGTCCATTCCCCACTATGAAATT 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631832087530200