Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq58391 105 1e-16 seq41671 100 4e-15 seq69626 98.7 2e-14 seq49399 98.7 2e-14 seq6725 98.7 2e-14 seq45475 89.7 8e-12 >seq58391 Length=5728 Score = 105 bits (116), Expect = 1e-16 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| ||||| |||||| |||||| || ||| | | Sbjct 5530 TGTATTTGGTCACAGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCCAACTCTCCGGGGA 5589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || || || || ||||| ||||| || | || | ||| ||| | ||||| |||| Sbjct 5590 GGAGGAGACGGACAGCGGTTTGGATTTCTCTGGAGGTGATGGTGGATCTCTTGTTGTAGT 5649 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || || ||||| | |||| | || | |||||||| || || ||||| Sbjct 5650 GAGCG--AGACGAGAGGACTCGGCGGCGATTCTCTCAAAGATGTCGTTCACGAAAGAGTT 5707 Query 1485648 CATGAT 1485653 |||||| Sbjct 5708 CATGAT 5713 >seq41671 Length=3059 Score = 100 bits (110), Expect = 4e-15 Identities = 169/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||| || || || ||||| |||||| |||||| |||||| ||| Sbjct 2771 TGTATTTTGTCACAGCCTTTGTTCCTTCAGAGACCGCGTGCTTGGCCAACTCGCCGGGCA 2830 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || | ||| ||||| || || || | || | ||| ||| | |||||| ||| Sbjct 2831 GGAGAAGTCTCACAGCGGTTTGAATTTCTCTGGAGGTGATGGTGGATCTCTTGTTGTAGT 2890 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || | ||||| | |||| | |||| |||||||| || || ||||| Sbjct 2891 GAGCG--AGACGAGAAGACTCGGCGGCGATTCTCTCGAAGATGTCGTTCACGAAGGAGTT 2948 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | || ||| | || ||| ||||| || ||||| | ||||| Sbjct 2949 CATGATGCTCATAGCCTTTGAGGATACACCAGTGTCAGGGTGGACTTGCTTCAAGACCTT 3008 Query 1485708 GTA 1485710 ||| Sbjct 3009 GTA 3011 >seq69626 Length=13310 Score = 98.7 bits (108), Expect = 2e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||| || || || ||||| |||||| |||||| |||||| ||| Sbjct 13019 TGTATTTTGTCACAGCCTTTGTTCCTTCAGAGACCGCGTGCTTGGCCAACTCGCCGGGCA 13078 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || | ||| ||||| || || || | || | ||| ||| | |||||| | | Sbjct 13079 GGAGAAGTCTCACAGCGGTTTGAATTTCTCTGGAGGTGATGGTGGATCTCTTGTTGTAAT 13138 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || || ||||| | |||| | |||| |||||||| || || ||||| Sbjct 13139 GAGCG--AGACGAGAGGACTCGGCGGCGATTCTCTCGAAGATGTCGTTAACGAAGGAGTT 13196 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | || ||| | || ||| ||||| || ||||| | ||||| Sbjct 13197 CATGATGCTCATAGCCTTTGAGGATACACCAGTGTCAGGGTGGACTTGCTTCAAGACCTT 13256 Query 1485708 GTAAA 1485712 |||| Sbjct 13257 ATAAA 13261 >seq49399 Length=2956 Score = 98.7 bits (108), Expect = 2e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||| || || || ||||| |||||| |||||| |||||| ||| Sbjct 139 TGTATTTTGTCACAGCCTTTGTTCCTTCAGAGACCGCGTGCTTGGCCAACTCGCCGGGCA 198 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || | ||| ||||| || || || | || | ||| ||| | |||||| | | Sbjct 199 GGAGAAGTCTCACAGCGGTTTGAATTTCTCTGGAGGTGATGGTGGATCTCTTGTTGTAAT 258 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || || ||||| | |||| | |||| |||||||| || || ||||| Sbjct 259 GAGCG--AGACGAGAGGACTCGGCGGCGATTCTCTCGAAGATGTCGTTAACGAAGGAGTT 316 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | || ||| | || ||| ||||| || ||||| | ||||| Sbjct 317 CATGATGCTCATAGCCTTTGAGGATACACCAGTGTCAGGGTGGACTTGCTTCAAGACCTT 376 Query 1485708 GTAAA 1485712 || | Sbjct 377 RTARA 381 >seq6725 Length=18876 Score = 98.7 bits (108), Expect = 2e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || ||||||||||| || ||||| |||||| |||| | || || | | Sbjct 12086 TGTATTTGGTCACAGCCTTGGTACCTTCAGAGACAGCGTGCTTGGCTAACTCTCCTGGGA 12027 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || || || || ||||| ||||| || | || ||| ||| | ||| | |||| Sbjct 12026 GGAGGAGACGGACAGCGGTTTGGATTTCTCTGGAAGTGATGGTGGATCTCTTATTGTAGT 11967 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || | ||||| | | || | || | || || ||||| |||||||| Sbjct 11966 GAGCG--AGACGTGAAGACTCGGCGGCAATTCTCTCAAAGATATCATTGACGAACGAGTT 11909 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| ||||| || ||||||||| ||||| || | ||||| Sbjct 11908 CATGATGCTCATGGCCTTGGAGGAGACACCAGTGTCGGGGTGGACCTGTTTCAAGACCTT 11849 Query 1485708 GTAAA 1485712 ||||| Sbjct 11848 GTAAA 11844 >seq45475 Length=29958 Score = 89.7 bits (98), Expect = 8e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || ||||| || || || || || |||||| |||||| || ||| | | Sbjct 19702 TGTATTTGGTCACAGCCTTCGTTCCTTCAGAAACAGCGTGCTTGGCCAACTCTCCGGGGA 19643 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || || || || || ||||| || | || | ||| ||| | |||||| ||| Sbjct 19642 GGAGAAGACGGACTGCAGTTTGGATTTCTCTGGAGGTGATGGTGGACCTCTTGTTGTAGT 19583 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || | ||||| |||| | || | || ||||| || || ||||| Sbjct 19582 GAGCG--AGACGAGAAGACTCGGCAGCGATTCTCTCAAAGATATCGTTCACGAAGGAGTT 19525 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| |||| ||| ||| ||||| |||||||| | ||||| Sbjct 19524 CATGATGCTCATGGCCTTGGAAGAGACGCCAGTGTCAGGGTGGACCTGCTTCAAGACCTT 19465 Query 1485708 GTAAA 1485712 |||| Sbjct 19464 ATAAA 19460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907399759634435