Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20317 125 5e-24 seq17180 114 8e-21 seq66674 111 1e-19 seq12343 91.5 1e-13 >seq20317 Length=5186 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||||||||||||| | ||| | ||| ||||| |||||||| ||||| | Sbjct 671 TTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 730 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| |||| ||||||||| || ||||||| |||||||| ||| | | Sbjct 731 ACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | || || ||||| | | |||| || || || | Sbjct 791 GGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||| || |||||||| || || |||||||| ||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| || ||||||| |||| ||| |||||| |||||||||||||| | Sbjct 215 TTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTG 274 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || |||| || | ||| || || || || |||| || ||||| ||| | | Sbjct 275 ATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAG 334 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | ||||| ||||| | | || | || || || | Sbjct 335 GAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCA 394 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || || || ||||| ||||| || || ||||| |||||||| Sbjct 395 CTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| || | || | |||| |||| ||||| || ||||| ||||| | Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| |||| |||||||| || |||||||||| ||||| ||| | | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | || || || ||| | | || | || || || | Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || ||||||||||| || | || || |||||||||||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 >seq17180 Length=12851 Score = 114 bits (126), Expect = 8e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || |||||||| |||||||| ||| | || |||| || | ||||||||| || |||||| Sbjct 4119 TTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGATC 4060 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | |||||||| ||| | || | |||||||| || | ||||| || || | | Sbjct 4059 AAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGATTTTGGTCTTAACATTTTCG 4000 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || |||||| || |||| ||| || || || |||||||||||||| || || Sbjct 3999 ATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACGAAA 3940 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 3939 ATCTGCAT 3932 >seq66674 Length=28361 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || || || ||||||||||||| |||| |||||| || |||||||| || | Sbjct 28103 TTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 28162 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| || | ||| || || || ||||||| ||||| |||||| | | Sbjct 28163 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 28222 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || ||||| || | ||||| ||||| | | || | || || || | Sbjct 28223 GAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCA 28282 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||| ||||| || || || || ||||| |||||||| Sbjct 28283 CTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || ||||||||||| || |||| |||| |||| ||| Sbjct 27211 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCTTCC 27270 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||| || || || ||||||| |||||||| ||| | || | ||||||||||| | Sbjct 27271 AATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCTTGA 27330 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| ||| || || || || | ||| || ||| || |||| || || || | Sbjct 27331 ATTTTGGCTTTAAC--ATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTT 27388 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || ||||| || || || || |||||||| Sbjct 27389 TACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || ||||| || | || | |||| || ||||| ||||||||||| || | Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTG 27706 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||| ||| || || || ||||| | ||||| || ||| | | Sbjct 27707 AAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27766 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | ||||| ||| || | | || | ||| || |||| Sbjct 27767 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGA 27826 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || || || || || || ||||| || |||||||| ||||| Sbjct 27827 CTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 >seq12343 Length=6788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| || || | |||||| |||||| | || | || |||| Sbjct 2171 AGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAAAGAGTACGACCATCC 2230 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC---ACCCCCTCCTTG 34882 || | ||| ||||| | ||||||| |||||||| ||| | || | |||||||| Sbjct 2231 TCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGAGGTATTCCCTCCTTA 2290 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || || |||||| ||| || || | ||||| |||||| || |||| ||| || Sbjct 2291 TCCTTGATTTTTGTTTTAAC--AT--TTTCGATA----GGCCTCAACCTCAAGGGTAATA 2342 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||| ||||||||||| || |||||||| Sbjct 2343 GTTTTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325362686429135