Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq42503 84.2 2e-11 seq20317 84.2 2e-11 seq66674 82.4 6e-11 >seq42503 Length=950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||| || ||||| || ||||| || || | ||| || ||| Sbjct 411 AATGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTC 352 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || || ||| ||||| ||||| | ||| || || Sbjct 351 TGATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 292 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || | | || | ||| |||||||| | ||||| | | |||| | | || || || Sbjct 291 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAA 232 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| ||||||||||| || | ||| | || | |||||| |||| || | Sbjct 231 CATCCAAAAGGAGTCCACCCTTCACTTAGTCCTCAGATTGAGAGGAGGRA 182 >seq20317 Length=5186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| |||||| | || || ||||| || || | ||| ||| ||| Sbjct 444 AATGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTC 385 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || || || ||||| ||||| | || ||||| Sbjct 384 AGACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 325 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| ||| || ||||| | || || | || | | ||||| || Sbjct 324 GCAGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAA 265 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||| || | || |||| | |||||| |||| |||| Sbjct 264 CATTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGGAA 215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||| | || || |||||||| || | ||| ||| ||| Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| ||||| | ||| |||||| Sbjct 839 GACACGATTGAAAATGTCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 780 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | ||| || || || ||||||| | ||| || | ||||||||| Sbjct 779 CAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACAAC 720 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||| || || | ||| | || |||| ||| |||| |||| Sbjct 719 ATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGGAA 671 >seq66674 Length=28361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||||||||| | || || ||||| || || | ||| || ||| Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| || ||| || || ||||| | ||| ||||| Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 27757 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || | | || | ||| |||||||| |||| || | | ||| | | || || || Sbjct 27756 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAA 27697 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||| ||||| | || | || || |||||| |||| |||| Sbjct 27696 CATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGGAA 27647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398472509070685