Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq66674 165 1e-35 seq42503 161 2e-34 seq20317 147 3e-30 >seq66674 Length=28361 Score = 165 bits (182), Expect = 1e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || |||||||| ||| |||| || ||| | | Sbjct 27874 TGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTCTG 27815 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| || ||||| ||||| || ||||||| Sbjct 27814 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAAC 27755 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| |||||| | |||||||||| | Sbjct 27754 AACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAACA 27695 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| ||| | |||||||| ||| |||| ||||| || Sbjct 27694 TTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGG 27649 Score = 156 bits (172), Expect = 7e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || |||||||| ||| |||| || ||| | | Sbjct 28102 TGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAG 28043 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 28042 ACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAAC 27983 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| ||||| | |||||||||||| Sbjct 27982 AACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACCCTTTCAGATTATAATA 27923 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| ||| | ||||||||||| |||| ||||| || Sbjct 27922 TTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGTGG 27877 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||| | || || |||||||| ||| |||| || ||| | | Sbjct 27646 TGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAAGCTTCTG 27587 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| || |||||| ||| |||||||| ||||| || ||||| | Sbjct 27586 ATACTATAGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAGC 27527 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| | || ||| |||| ||||| | Sbjct 27526 AACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGACGTACTTTATCAGACTATAACA 27467 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || || | |||||||| ||| || | ||||| |||| Sbjct 27466 TTCAAAAAGAGTCCACGTTGCATTTAGTTTTAAGACTTAGAGGTGGTA 27419 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || |||||||| || || |||| || ||| | | Sbjct 28330 TGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTCAG 28271 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| ||| ||| ||||| ||||| || || |||| Sbjct 28270 ACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAAC 28211 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| ||||| | |||||||||| | Sbjct 28210 AACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAACA 28151 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || | || | || | ||||||||||||| Sbjct 28150 TCCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGATTAAGAGGAGG 28105 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||| | || || |||||||| ||| |||| || || | | Sbjct 27418 TGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCTG 27359 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||||| ||| || || |||||||| || ||||| | Sbjct 27358 ATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAGC 27299 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| | || ||| | |||||||| | Sbjct 27298 AACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAACA 27239 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || || || || || Sbjct 27238 TTCAAAAAGAATCTACCCTTCACTTGGTTTTGCG 27205 >seq42503 Length=950 Score = 161 bits (178), Expect = 2e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || |||||||| ||| |||| || ||| | | Sbjct 865 TGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAG 806 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 805 ACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAAC 746 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| ||||| | |||||||||||| Sbjct 745 AACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACNCTTTCAGATTATAATA 686 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| ||| | ||||||||||| |||| |||||||| Sbjct 685 TTCAAAAGGAATCCACTCTTCATTTAGTATTGAGATTGAGAGGAGG 640 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || ||||| || ||| |||| || ||| | | Sbjct 409 TGCAAATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCTG 350 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || |||||| ||| ||| ||||| ||||| || || |||| Sbjct 349 ATACTATTGAGAATGTTAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAAC 290 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| ||||| | |||||||||| | Sbjct 289 AACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCAGATTATAACA 230 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || | || ||||| | |||| |||||||| Sbjct 229 TCCAAAAGGAGTCCACCCTTCACTTAGTCCTCAGATTGAGAGGAGG 184 Score = 116 bits (128), Expect = 6e-21 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || ||||| || ||||| || ||| |||| || ||| | | Sbjct 181 TGCARATTTTTGTCAAGACCTTAACTGGTAAAACTATCACTCTTGAAGTCGAAGCTTCTG 122 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 121 ATACTATTGAGAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGC 62 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| |||||||||||||| ||| | || ||| |||| ||||| | Sbjct 61 AGAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTTTATCAGACTATAACA 2 Query 146212 T 146212 | Sbjct 1 T 1 >seq20317 Length=5186 Score = 147 bits (162), Expect = 3e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || |||||||| ||| |||| || ||| | | Sbjct 214 TGCAAATCTTTGTTAAGACCTTAACCGGTAAAACAATCACTCTTGAAGTCGAAGCTTCAG 155 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 154 ACACAATTGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAAC 95 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||||| || ||| ||||| | |||||||||||| Sbjct 94 AACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCAGATTATAATA 35 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | ||||| ||||| ||| | ||||||||||| Sbjct 34 TTCAAAAGGAATCCACTCTTCATTTAGTATT 4 Score = 143 bits (158), Expect = 4e-29 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||| ||| |||| || ||| | | Sbjct 442 TGCAGATTTTTGTTAAAACTCTCACTGGAAAAACAATCACTCTTGAAGTGGAAGCTTCAG 383 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 382 ACACTATTGAAAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCAGC 323 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| || ||||||||||| ||| | || ||| |||| ||||| | Sbjct 322 AGAGATTGATTTTTGCTGGYAAACAATTAGAAGATGGACGTACTTTATCAGACTATAACA 263 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || ||||| | ||||| || | |||| |||||||| Sbjct 262 TTCAAAAGGAGTCGACCCTTCATTTGGTCCTTAGATTGAGAGGAGG 217 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || ||||| || ||||| | || || |||| | Sbjct 670 TGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTCAG 611 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || || || ||| ||| ||||| ||||| || ||||| | Sbjct 610 ATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAGC 551 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || || || ||| | || || |||| || || | Sbjct 550 AGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAACA 491 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | |||||||||||| |||| |||||||| Sbjct 490 TCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGG 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785349130891800