Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq20317 181 8e-41 seq66674 176 3e-39 seq42503 167 2e-36 seq17180 113 3e-20 seq12343 109 4e-19 seq62093 100 2e-16 >seq20317 Length=5186 Score = 181 bits (200), Expect = 8e-41 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || ||||||||||| || || || |||||||||||||| || | Sbjct 216 TCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGA 275 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | |||||| |||||| | |||||||| |||||||| || || Sbjct 276 TAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGG 335 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || || ||||| | ||| |||||| |||| | |||||| ||| ||| || Sbjct 336 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCAC 395 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || ||||| ||||| | ||||||||||| ||||||||| Sbjct 396 TTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || |||||||| |||||||| |||||||| |||||||| | || || | ||| || Sbjct 7 ACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCC 66 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | || || | ||| ||||| || |||||||| || || ||||| Sbjct 67 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGG 126 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || ||| ||| |||| | ||||| ||| ||| ||||||||||| || ||||| Sbjct 127 ATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTA 186 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| |||||||| || |||||| Sbjct 187 CCGGTTAAGGTCTTAACAAAGATTTGCATT 216 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| ||||| | ||| || || || || |||||||| ||||||||||| || || | Sbjct 672 TCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGA 731 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| || || ||| || | ||| || |||||| | ||||| | ||||||||| || | Sbjct 732 CAAT-GTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGG 790 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || || || || || || || |||||| |||| | ||||| ||| ||| Sbjct 791 GGATTCCTTCCTTATCCTG-GATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCC 849 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 850 ACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq66674 Length=28361 Score = 176 bits (194), Expect = 3e-39 Identities = 167/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | |||||| ||||||||||||||||| || | | || || ||| || Sbjct 27439 ACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCATCCTCT 27498 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| |||||| | ||||| | ||||||||| || |||||||| ||||||||||| Sbjct 27499 AATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTG- 27557 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || ||| |||||| ||| |||||| ||| ||||||||||| || ||||| Sbjct 27558 AATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGTTTT 27617 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | |||||||| || ||||||||| Sbjct 27618 ACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 170 bits (188), Expect = 1e-37 Identities = 169/216 (78%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||| ||||| || ||||||||||||||||||||||| | | ||||| | Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| |||||| | ||||| | ||||||||| || ||||| ||||| ||| Sbjct 27265 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTG 27324 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| | || | || ||||| | || ||||||||||| || Sbjct 27325 TCTTG-AATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGAT 27383 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | |||||||| || |||||||| Sbjct 27384 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 168 bits (186), Expect = 5e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | | || |||||||| || ||||| ||||||||||||||||| | Sbjct 27648 TCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGA 27707 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | |||||| |||||| | || || | ||| ||||| || || Sbjct 27708 AAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGG 27767 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || |||||||| |||||| | ||| ||| |||| | ||| |||||| ||| | Sbjct 27768 AATACCTTCCTTGTCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGA 27826 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||||| || ||||| ||||| | |||||| ||||| || |||||| Sbjct 27827 CTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 165 bits (182), Expect = 6e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | || || |||||||| |||||||| |||||||| |||||||| | Sbjct 27876 TCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGA 27935 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| || | |||||| |||||| | || || | ||| ||||| || || Sbjct 27936 AAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGG 27995 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || || ||||| | || ||| ||| |||| | ||||| ||| ||| || Sbjct 27996 AATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGAC 28055 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || ||||| || |||||||| |||||||| || |||||| Sbjct 28056 TTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | || |||| ||||| ||||| || ||||| ||||||||||| | Sbjct 28104 TCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGA 28163 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | |||||| |||||| | ||||| | ||| || || || || Sbjct 28164 AAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 28223 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || || ||||| |||||| | |||||| |||| | ||||| ||| ||| | Sbjct 28224 AATACCTTCCTTATCTTG-AATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCA 28282 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || ||||| ||||| | ||||||||||| ||||||||| Sbjct 28283 CTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 >seq42503 Length=950 Score = 167 bits (184), Expect = 2e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || |||||||| |||||||| |||||||| |||||||| | Sbjct 639 TCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGA 698 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | |||||| |||||| | || || | ||| ||||| || || Sbjct 699 AAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGG 758 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || || ||||| | || ||| ||| |||| | ||||| ||| ||| || Sbjct 759 AATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGAC 818 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || ||||| || |||||||| |||||||| || |||||| Sbjct 819 TTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | || || || ||||| ||||| || ||||| ||||||||||| | | Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | |||||| |||||| | ||||| | ||| || || || ||| Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || || ||||| |||||| | || ||| | || | ||| |||||| ||| || Sbjct 304 ATACCTTCCTTATCTTG-AATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGAC 362 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| |||||||| ||||||||||| || ||||| || |||||| Sbjct 363 TTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || ||||| ||||| || || || || || || || ||||| | Sbjct 411 TCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGA 470 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | ||| ||||||||| ||||||||||||||||||| || || Sbjct 471 AAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGG 530 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || || ||||| |||||| | |||||| |||| | ||||| || ||| | Sbjct 531 AATTCCTTCCTTATCTTG-AATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAA 589 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||| || || ||||| ||||| | ||||||||| || ||||||||| Sbjct 590 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 136 bits (150), Expect = 3e-27 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 29605 ATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTT 29664 |||||||| || | | || || ||| || | |||||| |||||| | |||||||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 |||||||| || ||||| || || || ||||| | ||| |||||| | || | ||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 |||||| ||| ||||||||||| |||||||| ||||||||||| || ||||| || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 29785 AT 29786 || Sbjct 181 AT 182 >seq17180 Length=12851 Score = 113 bits (124), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||||||||| || |||| || ||| || ||| || | ||| || || ||| | | Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTT 29715 |||| | ||||||||| || ||||| ||||| || || || ||||| || || ||| || Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTG-GATTTTGGTCTTAACATTT 4003 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | ||| || || || || ||||| || |||||||| || || | ||| || || Sbjct 4002 TCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCACG 3943 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 3942 AAAATCTGCAT 3932 >seq12343 Length=6788 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| ||||||||||||| |||||| || ||| || || ||| ||| Sbjct 2171 AGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAAAGAGTACGACCATCC 2230 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC---CGGCGGAATACCCTCTTTG 29691 || | |||||| ||| || | ||||| | ||||||||| || || || ||||| || Sbjct 2231 TCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGAGGTATTCCCTCCTTA 2290 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || | | ||||||| ||| ||| |||| | || | | || || ||||| || || Sbjct 2291 TCCT-TGATTTTTGTTTTAACATTTTCGATAG-GCC-------TCAACCTCAAGGGTAAT 2341 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || | | ||| || || || |||||||| Sbjct 2342 AGTTTTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 >seq62093 Length=56387 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| |||||||||||||| | | || | ||| ||||| || ||||||||| | | Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTT 29715 | | | ||||||||| || ||||| || || || || || || || || || ||| || Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTG-GATCTTAGTCTTCACATTT 3646 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || || ||| |||| || ||||| || || || ||||| || || ||||| || Sbjct 3647 TCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACG 3706 Query 29776 AATATCTGCATTTT 29789 || || ||||| || Sbjct 3707 AAGATTTGCATCTT 3720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384828752051265