Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq46208 113 6e-20 >seq46208 Length=8390 Score = 113 bits (124), Expect = 6e-20 Identities = 333/503 (66%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 168615 GAATTTTTAGATT-TATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTA 168673 ||||||||||||| |||| || |||||| | ||| |||| || ||| | |||||| | || Sbjct 5975 GAATTTTTAGATTCTATG-GGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATA 5917 Query 168674 TGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTG-ATACAGATTACACCG 168732 |||||| |||||| | ||| ||||| |||| | | | | || | || || ||| | Sbjct 5916 TGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAA-TATGCACACTGACTACCAAG 5858 Query 168733 GACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTACACAACAATCCGGAAAATA 168792 | ||||||| ||||| | ||| ||| || ||| || | | || || | || Sbjct 5857 GGAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATAAAAGATAACCCAAACGATC 5798 Query 168793 GAAGAATATTAATTAATAGTTGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTT 168852 | | |||||||| ||| || | | || |||| ||||||||||| Sbjct 5797 GTCGTATATTAATGTGCGCCTGGAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTT 5738 Query 168853 GTCACACTTTAGTGCAATTTTATGTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATC 168912 ||||| ||| | ||||||||||| | || | || || |||||| || |||| Sbjct 5737 GTCACTGTTTGGCTCAATTTTATGTT-GCCAATGGTGAAC--TATCTTGTCAATTATATC 5681 Query 168913 AAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAA 168972 || |||| || ||| | |||||||||||||||| ||| || | | |||||| | |||| Sbjct 5680 AACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTCTCTTAA 5621 Query 168973 CACTTGTGCTAAGTAAATG-GTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGA 169031 | || || | | ||| | ||| | | ||||| | || |||||||| || || Sbjct 5620 CGATTATG-TTGGCCCATGTGACCAATCTCAAACCTGGTGAATTCATTCATACCTTAGGT 5562 Query 169032 GATGTTCACGTGTATTCAAACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCA 169091 |||| ||||| || || || |||| | ||| | | ||||| || ||| | ||| Sbjct 5561 GATGCACACGTATACAACAATCACATTGATGCCTTAGAAGAACAATTAAAGAGAGAGCCA 5502 Query 169092 TATTCTTTTCCAAATGTTAAATT 169114 | | || || | | | ||||| Sbjct 5501 CGTCCATTCCCCACTATGAAATT 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634517293186200